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H
h
- Variable in class com.sshtools.common.ui.
EmptyIcon
h
- Static variable in class com.sshtools.daemon.terminal.
Colorizer
H
- Static variable in interface com.sshtools.daemon.terminal.
Terminal
H_GAP
- Variable in class com.sshtools.common.ui.
PrintPreview.PreviewContainer
handle
- Variable in class com.sshtools.j2ssh.sftp.
SftpFile
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpClose
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpFSetStat
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpFStat
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpHandle
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpRead
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpReadDir
handle
- Variable in class com.sshtools.j2ssh.sftp.
SshFxpWrite
handleCharInput(int)
- Method in class com.sshtools.daemon.terminal.
Editline
handleCharInput(int)
- Method in class com.sshtools.daemon.terminal.
UserInput
HANDLED
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
handleEscapeSequence(int)
- Method in class com.sshtools.daemon.terminal.
TerminalIO
handler
- Variable in class com.sshtools.j2ssh.authentication.
KBIAuthenticationClient
handles
- Variable in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
HapCCAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
A form that allows the user to create a Haplotype-based C/C test plink command line
HapCCAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
Create a Haplotype-based C/C test
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
haploAppend
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
A JTextField for the haploview append command.
HaploFreq
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HaploFreq(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
haploPath
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
A JTextField for the haploview jar path.
HaploPhase
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HaploPhase(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
HAPLOVIEW_APPEND
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
HAPLOVIEW_PATH
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
HapTDTAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
A haplotype, family based association test form.
HapTDTAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
Create this form.
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hardwrapped
- Variable in class com.sshtools.daemon.terminal.
Editline
hardwrapped
- Variable in class com.sshtools.daemon.terminal.
UserInput
HardyWinEq
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
Create a form that checks the hardy weinburg equalibrium of a given data set.
HardyWinEq(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HardyWinEq
Create a hardy-Weinburg form.
hasAcceptableKey(SshClient)
- Method in class com.sshtools.j2ssh.agent.
AgentAuthenticationClient
hasActiveConfigurations()
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingClient
hasActiveForwardings()
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingClient
hasActiveSession(String)
- Method in class com.sshtools.j2ssh.
SshClient
Returns true if there is an active session channel of the specified type.
hasActiveSftpClient()
- Method in class com.sshtools.j2ssh.
SshClient
Determine if there are existing sftp clients open
hasDigitWildcard()
- Method in class com.sshtools.daemon.util.
StringPattern
hasError()
- Method in class com.sshtools.j2ssh.transport.
TransportProtocolState
Hash
- Class in
com.sshtools.j2ssh.util
Hash(String)
- Constructor for class com.sshtools.j2ssh.util.
Hash
Creates a new Hash object.
hash
- Variable in class com.sshtools.j2ssh.util.
Hash
HASH_AND_SIGN
- Static variable in class com.sshtools.j2ssh.agent.
SshAgentClient
The hash and sign private key operation
hashAndSign(SshPublicKey, byte[])
- Method in class com.sshtools.j2ssh.agent.
SshAgentClient
Request a hash and sign operation be performed for a given public key.
hashCode()
- Method in class com.sshtools.common.util.
UID
hashCode()
- Method in class com.sshtools.j2ssh.io.
UnsignedInteger32
hashCode()
- Method in class com.sshtools.j2ssh.io.
UnsignedInteger64
hashCode()
- Method in class com.sshtools.j2ssh.transport.publickey.dsa.
SshDssPrivateKey
hashCode()
- Method in class com.sshtools.j2ssh.transport.publickey.rsa.
SshRsaPrivateKey
hashCode()
- Method in class com.sshtools.j2ssh.transport.publickey.
SshPublicKey
hasLock()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
hasMessages()
- Method in class com.sshtools.j2ssh.transport.
SshMessageStore
Evaluate whether the store has any messages.
hasMoreData()
- Method in class com.sshtools.j2ssh.util.
SimpleASNReader
hasMoreElements()
- Method in class com.sshtools.j2ssh.util.
ExtensionClassLoader.ResourceEnumeration
hasNext()
- Method in class com.sshtools.daemon.util.
StringScanner
Returns true, if the scanner has not yet reached the end.
hasSucceeded()
- Method in class com.sshtools.j2ssh.connection.
GlobalRequestResponse
hasTimedOut()
- Method in class com.sshtools.j2ssh.agent.
KeyConstraints
hasUserContext()
- Static method in class com.sshtools.j2ssh.
SshThread
hasWildcard()
- Method in class com.sshtools.daemon.util.
StringPattern
Returns true if the pattern contains any '' or '?' wildcard character.
header
- Static variable in class com.sshtools.common.automate.
SSH2AuthorizedKeysFormat
header
- Variable in class com.sshtools.j2ssh.openssh.
PEMReader
header
- Variable in class com.sshtools.j2ssh.openssh.
PEMWriter
headers
- Variable in class com.sshtools.j2ssh.transport.publickey.
Base64EncodedFileFormat
height
- Variable in class com.sshtools.daemon.session.
PseudoTerminalWrapper
HEX_CHARS
- Static variable in class com.sshtools.j2ssh.openssh.
PEM
HIDE_TOOLBAR_TEXT
- Static variable in class com.sshtools.common.ui.
StandardAction
hideText
- Variable in class com.sshtools.common.ui.
ToolButton
hideText
- Variable in class com.sshtools.common.ui.
ToolToggleButton
HierarchyDialog
- Class in
edu.harvard.mgh.purcell.gCLINE
HierarchyDialog(String, StartFrame, Record, String, String)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
Main constructor.
HierarchyDialog.MyRenderer
- Class in
edu.harvard.mgh.purcell.gCLINE
HierarchyDialog.MyRenderer()
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog.MyRenderer
hmac
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolAlgorithmSync
hmac
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolInputStream
HmacMd5
- Class in
com.sshtools.j2ssh.transport.hmac
HmacMd5()
- Constructor for class com.sshtools.j2ssh.transport.hmac.
HmacMd5
Creates a new HmacMd5 object.
HmacMd596
- Class in
com.sshtools.j2ssh.transport.hmac
HmacMd596()
- Constructor for class com.sshtools.j2ssh.transport.hmac.
HmacMd596
Creates a new HmacMd596 object.
HmacSha
- Class in
com.sshtools.j2ssh.transport.hmac
HmacSha()
- Constructor for class com.sshtools.j2ssh.transport.hmac.
HmacSha
Creates a new HmacSha object.
HmacSha96
- Class in
com.sshtools.j2ssh.transport.hmac
HmacSha96()
- Constructor for class com.sshtools.j2ssh.transport.hmac.
HmacSha96
Creates a new HmacSha96 object.
HOME
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
HOME_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
project file key
homeCursor()
- Method in class com.sshtools.daemon.terminal.
TerminalIO
homedir
- Static variable in class com.sshtools.j2ssh.configuration.
ConfigurationLoader
homGroupButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homHetButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homHetText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homKBButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homKBText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homMatchButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homMatchText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homogButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
HomozRuns
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HomozRuns(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homSNPButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homSNPText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homVerboseButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
host
- Variable in class com.sshtools.common.ui.
HostsTab.HostWrapper
host
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientApplet
host
- Variable in class com.sshtools.common.ui.
StatusBar
host
- Variable in class com.sshtools.j2ssh.configuration.
SshConnectionProperties
host
- Variable in class com.sshtools.j2ssh.forwarding.
XDisplay
host
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
host
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
A JTextField that keeps the host name.
HOST_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
A string that states the remote host key.
HOST_KEY_NOT_VERIFIABLE
- Static variable in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
HOST_NOT_ALLOWED
- Static variable in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
HostbasedAuthenticationClient
- Class in
com.sshtools.j2ssh.authentication
HostbasedAuthenticationClient()
- Constructor for class com.sshtools.j2ssh.authentication.
HostbasedAuthenticationClient
Creates a new HostbasedAuthenticationClient object.
hostFile
- Variable in class com.sshtools.common.hosts.
AbstractHostKeyVerification
hostFileWriteable
- Variable in class com.sshtools.common.hosts.
AbstractHostKeyVerification
hostFileWriteable
- Variable in class com.sshtools.j2ssh.transport.
AbstractKnownHostsKeyVerification
hostKey
- Variable in class com.sshtools.j2ssh.transport.kex.
KeyExchangeState
hostKey
- Variable in class com.sshtools.j2ssh.transport.kex.
SshKeyExchange
hostKey
- Variable in class com.sshtools.j2ssh.transport.kex.
SshMsgKexDhReply
hostKey
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
hostKeyVerification
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
HostKeyVerification
- Interface in
com.sshtools.j2ssh.transport
An interface to allow the transport protocol to verify the public key supplied by the server during key-exchange
hostKeyVerifier
- Variable in class com.sshtools.common.ui.
HostsTab
hosts
- Variable in class com.sshtools.common.ui.
HostsTab
hosts
- Variable in class com.sshtools.common.ui.
HostsTab.HostsListModel
hosts
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolClient
hosts
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
HostsTab
- Class in
com.sshtools.common.ui
HostsTab(AbstractKnownHostsKeyVerification)
- Constructor for class com.sshtools.common.ui.
HostsTab
Creates a new HostsTab object.
HostsTab.HostRenderer
- Class in
com.sshtools.common.ui
HostsTab.HostRenderer()
- Constructor for class com.sshtools.common.ui.
HostsTab.HostRenderer
HostsTab.HostsListModel
- Class in
com.sshtools.common.ui
HostsTab.HostsListModel()
- Constructor for class com.sshtools.common.ui.
HostsTab.HostsListModel
HostsTab.HostWrapper
- Class in
com.sshtools.common.ui
HostsTab.HostWrapper(boolean, String, Map)
- Constructor for class com.sshtools.common.ui.
HostsTab.HostWrapper
hostToConnect
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingConfiguration
hostToConnectOrBind
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingChannelImpl
HT
- Static variable in interface com.sshtools.daemon.terminal.
Terminal
HttpHeader
- Class in
com.sshtools.j2ssh.net
HttpHeader()
- Constructor for class com.sshtools.j2ssh.net.
HttpHeader
Creates a new HttpHeader object.
httpProxy
- Variable in class com.sshtools.common.ui.
SshToolsConnectionProxyTab
HttpProxySocketProvider
- Class in
com.sshtools.j2ssh.net
HttpProxySocketProvider(String, int, String, int)
- Constructor for class com.sshtools.j2ssh.net.
HttpProxySocketProvider
HttpRequest
- Class in
com.sshtools.j2ssh.net
HttpRequest()
- Constructor for class com.sshtools.j2ssh.net.
HttpRequest
Creates a new HttpRequest object.
HttpResponse
- Class in
com.sshtools.j2ssh.net
HttpResponse(InputStream)
- Constructor for class com.sshtools.j2ssh.net.
HttpResponse
Creates a new HttpResponse object.
hwe
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Fields for user entered thresholds
hweButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Buttons to flag user specified thresholds
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
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All Classes
A
B
C
D
E
F
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H
I
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