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O

ok - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
ok - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
oldname - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
onDeniedHost(String) - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record.myHostKeyValidator
 
onHostKeyMismatch(String, String, String) - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record.myHostKeyValidator
 
onlyDir - Variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
 
onlyLocal - Variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
Flag file we are looking for as local or remote.
onUnknownHost(String, String) - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record.myHostKeyValidator
 
OP_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
key word for the operations nodes
OP_LOG_EXT - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Record
A string that identifies the file extention for the operation log file.
op_status_ext - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater
The file extention that this updater looks at to determine the exit status of the log.
Open - Class in edu.harvard.mgh.purcell.gCLINE.tester
A dialog that opens a new project.
Open(TestFrame) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.Open
Create a dialog that will open up a new project and establish an ssh connection.
Open(TestFrame, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.Open
 
Open.gCLINEFilter - Class in edu.harvard.mgh.purcell.gCLINE.tester
A FileFilter that will look for directories
Open.gCLINEFilter() - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.Open.gCLINEFilter
 
openAlt - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
Launch the user specified file viewer.
openDefault - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
Launch the default file viewer
OperationInfo - Class in edu.harvard.mgh.purcell.gCLINE.data
A class that contains the information for a given operation.
OperationInfo() - Constructor for class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
 
OperationInfo(String, String, String, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
 
operations - Variable in class edu.harvard.mgh.purcell.gCLINE.DeleteOpDialog
A JCheckBox array that holds the deletion options for the selected opertaions.
opName - Variable in class edu.harvard.mgh.purcell.gCLINE.HierarchyDialog
 
opName - Variable in class edu.harvard.mgh.purcell.gCLINE.LinkNewFileDialog
A String that identifies the operation you want to link the file to.
opnames - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
An array of the operation names
opStatis - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater
A hash map that keeps all the operations and their current status completed, running, or failed.
OpView - Class in edu.harvard.mgh.purcell.gCLINE.pane
Look at the operation tree.
OpView(Record, FileView) - Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.OpView
Create an operation view
opViewer - Variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
A panel to look at the operation tree.
OUTFILE_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
key word for the output file group
outfileLabel - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
outfiles - Variable in class edu.harvard.mgh.purcell.gCLINE.DeleteOpDialog
A JCheckBox array that holds the deletion options for the selected output files.
outfileText - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
output - Variable in class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
A DefaultMutableTreeNode that holds the output files.
output - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
outputLines - Variable in class edu.harvard.mgh.purcell.gCLINE.data.RunCommand
 

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