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C
C
- Static variable in class com.sshtools.daemon.terminal.
Colorizer
c
- Static variable in class com.sshtools.daemon.terminal.
Colorizer
C
- Static variable in interface com.sshtools.daemon.terminal.
Terminal
cache
- Variable in class com.sshtools.j2ssh.util.
DynamicClassLoader
cache
- Variable in class com.sshtools.j2ssh.util.
ExtensionClassLoader
calculateExchangeHash()
- Method in class com.sshtools.j2ssh.transport.kex.
DhGroup1Sha1
calculateStrength()
- Method in class com.sshtools.common.keygen.
KeygenPanel
callback
- Variable in class com.sshtools.common.ui.
OptionsDialog
CAN
- Static variable in interface com.sshtools.daemon.terminal.
Terminal
canAuthenticate()
- Method in class com.sshtools.j2ssh.agent.
AgentAuthenticationClient
canAuthenticate()
- Method in class com.sshtools.j2ssh.authentication.
HostbasedAuthenticationClient
canAuthenticate()
- Method in class com.sshtools.j2ssh.authentication.
KBIAuthenticationClient
canAuthenticate()
- Method in class com.sshtools.j2ssh.authentication.
PasswordAuthenticationClient
canAuthenticate()
- Method in class com.sshtools.j2ssh.authentication.
PublicKeyAuthenticationClient
canAuthenticate()
- Method in class com.sshtools.j2ssh.authentication.
SshAuthenticationClient
cancel()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater
runs the Timer's cancel and set the opStatis to null for garbage collection.
cancel
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
cancel
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
cancel
- Variable in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
An ActionListener that closes the dialog without doing anything.
cancel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
A JButton that signals the cancelation of the form.
cancel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
cancel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
cancel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Cancel the dailog and throw it away without changing things
cancel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
A JButton to close the dialog without doing anything.
cancelButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
cancelButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Buttons to operate this dialog
cancelled
- Variable in class com.sshtools.common.authentication.
AuthenticationDialog
cancelled
- Variable in class com.sshtools.common.authentication.
KBIRequestHandlerDialog
cancelled
- Variable in class com.sshtools.common.authentication.
PasswordChange.PasswordChangeDialog
cancelled
- Variable in class com.sshtools.common.ui.
OptionsPanel
CANCELLED
- Static variable in class com.sshtools.j2ssh.authentication.
AuthenticationProtocolState
canClose(OptionsDialog, Option)
- Method in interface com.sshtools.common.ui.
OptionCallback
canClose()
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel
Called by the application framework to test the closing state
canExecute
- Variable in class com.sshtools.daemon.vfs.
VFSPermission
canExecute()
- Method in class com.sshtools.daemon.vfs.
VFSPermission
canExit()
- Method in class com.sshtools.common.ui.
SessionProviderFrame
Called by the application framework when testing exit state
canExit()
- Method in class com.sshtools.common.ui.
SessionProviderInternalFrame
Called by the application framework when testing exit state
canPrompt()
- Method in class com.sshtools.j2ssh.authentication.
SshAuthenticationClient
canRead
- Variable in class com.sshtools.daemon.vfs.
VFSPermission
canRead()
- Method in class com.sshtools.daemon.vfs.
VFSPermission
canRead()
- Method in class com.sshtools.j2ssh.sftp.
SftpFile
canUse()
- Method in class com.sshtools.j2ssh.agent.
KeyConstraints
canWrite
- Variable in class com.sshtools.daemon.vfs.
VFSPermission
canWrite()
- Method in class com.sshtools.daemon.vfs.
VFSPermission
canWrite()
- Method in class com.sshtools.j2ssh.sftp.
SftpFile
CCAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
CCAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
ccButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
ccFilterButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
ccFilterCBox
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
cd(String)
- Method in class com.sshtools.j2ssh.
SftpClient
Changes the working directory on the remote server.
CELL_DEFAULT
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
cellButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
center(String, int)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns the given string filled (on the right and right) up to the specified length with spaces.
centerCh(String, int, char)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns the given string filled equally left and right up to the specified length with the given character.
CH_CR
- Static variable in class com.sshtools.daemon.util.
StringUtil
Constant for the carriage return character
CH_NEWLINE
- Static variable in class com.sshtools.daemon.util.
StringUtil
Constant for the new line character
CH_SPACE
- Static variable in class com.sshtools.daemon.util.
StringUtil
Constant for the space character
CH_TAB
- Static variable in class com.sshtools.daemon.util.
StringUtil
Constant for the tabulator character
CHANGE_PASSPHRASE
- Static variable in class com.sshtools.common.keygen.
KeygenPanel
CHANGE_PASSPHRASE
- Static variable in class com.sshtools.common.keygen.
KeygenPanel2
changedUpdate(DocumentEvent)
- Method in class com.sshtools.common.keygen.
KeygenPanel
changeFromTo
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
changePass
- Static variable in class com.sshtools.j2ssh.transport.publickey.
SshKeyGenerator
changePassphrase(File)
- Static method in class com.sshtools.j2ssh.transport.publickey.
SshKeyGenerator
changePassphrase(File, String, String)
- Static method in class com.sshtools.j2ssh.transport.publickey.
SshKeyGenerator
changePassphrase(String, String)
- Method in class com.sshtools.j2ssh.transport.publickey.
SshPrivateKeyFile
changePassword(String)
- Method in class com.sshtools.common.authentication.
PasswordChange
changePassword(String, String, String)
- Method in class com.sshtools.daemon.platform.
NativeAuthenticationProvider
changePassword(String)
- Method in interface com.sshtools.j2ssh.authentication.
PasswordChangePrompt
changePermissions(SftpFile, String)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
changePermissions(SftpFile, int)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
changePermissions(String, int)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
changePermissions(String, String)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
changePrompt
- Variable in class com.sshtools.j2ssh.authentication.
PasswordAuthenticationClient
changeTerminalDimensions(PseudoTerminal)
- Method in class com.sshtools.j2ssh.session.
SessionChannelClient
changeTransitFile(String[], boolean)
- Method in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
Tell the file transfur status that there is a change in the files being transfered.
Channel
- Class in
com.sshtools.j2ssh.connection
Channel()
- Constructor for class com.sshtools.j2ssh.connection.
Channel
Creates a new Channel object.
channel
- Variable in class com.sshtools.j2ssh.connection.
ChannelOutputStream
channel
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingBindingChannel
channel
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingIOChannel
channel
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingSocketChannel
channel
- Variable in class com.sshtools.j2ssh.
ScpClient.ScpInputStream
CHANNEL_CLOSED
- Static variable in class com.sshtools.j2ssh.connection.
ChannelState
CHANNEL_OPEN
- Static variable in class com.sshtools.j2ssh.connection.
ChannelState
CHANNEL_UNINITIALIZED
- Static variable in class com.sshtools.j2ssh.connection.
ChannelState
channelData
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelData
channelData
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelExtendedData
channelData
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelOpen
channelData
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelOpenConfirmation
channelData
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelRequest
ChannelDataWindow
- Class in
com.sshtools.j2ssh.connection
ChannelDataWindow()
- Constructor for class com.sshtools.j2ssh.connection.
ChannelDataWindow
Creates a new ChannelDataWindow object.
ChannelEventAdapter
- Class in
com.sshtools.j2ssh.connection
Title:
ChannelEventAdapter()
- Constructor for class com.sshtools.j2ssh.connection.
ChannelEventAdapter
Creates a new ChannelEventAdapter object.
ChannelEventListener
- Interface in
com.sshtools.j2ssh.connection
ChannelFactory
- Interface in
com.sshtools.j2ssh.connection
channelId
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelFailure
channelId
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelSuccess
ChannelInputStream
- Class in
com.sshtools.j2ssh.connection
ChannelInputStream(SshMessageStore, Integer)
- Constructor for class com.sshtools.j2ssh.connection.
ChannelInputStream
Creates a new ChannelInputStream object.
ChannelInputStream(SshMessageStore)
- Constructor for class com.sshtools.j2ssh.connection.
ChannelInputStream
Creates a new ChannelInputStream object.
ChannelOutputStream
- Class in
com.sshtools.j2ssh.connection
ChannelOutputStream(Channel, Integer)
- Constructor for class com.sshtools.j2ssh.connection.
ChannelOutputStream
Creates a new ChannelOutputStream object.
ChannelOutputStream(Channel)
- Constructor for class com.sshtools.j2ssh.connection.
ChannelOutputStream
Creates a new ChannelOutputStream object.
ChannelState
- Class in
com.sshtools.j2ssh.connection
ChannelState()
- Constructor for class com.sshtools.j2ssh.connection.
ChannelState
Creates a new ChannelState object.
channelType
- Variable in class com.sshtools.j2ssh.connection.
SshMsgChannelOpen
channelTypes
- Variable in class com.sshtools.daemon.forwarding.
ForwardingServer
channelTypes
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingClient
characters(char[], int, int)
- Method in class com.sshtools.common.configuration.
Authorization.AuthorizedKeysSAXHandler
characters(char[], int, int)
- Method in class com.sshtools.common.configuration.
SshAPIConfiguration
characters(char[], int, int)
- Method in class com.sshtools.common.configuration.
SshToolsConnectionProfile.XMLHandler
characters(char[], int, int)
- Method in class com.sshtools.common.mru.
MRUList.MRUSAXHandler
characters(char[], int, int)
- Method in class com.sshtools.daemon.configuration.
PlatformConfiguration.PlatformConfigurationSAXHandler
characters(char[], int, int)
- Method in class com.sshtools.daemon.configuration.
ServerConfiguration
characters(char[], int, int)
- Method in class com.sshtools.daemon.configuration.
SshAPIConfiguration
CharacterUpdate
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
CharBuffer
- Class in
com.sshtools.daemon.terminal
CharBuffer(int)
- Constructor for class com.sshtools.daemon.terminal.
CharBuffer
Creates a new CharBuffer object.
charsAreEqual(char, char)
- Method in class com.sshtools.daemon.util.
StringExaminer
charsAreEqual(char, char)
- Method in class com.sshtools.daemon.util.
StringPattern
checkAndGetProperty(String, String)
- Static method in class com.sshtools.j2ssh.configuration.
ConfigurationLoader
checkButtons()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Enable the ok and remote browse buttons as appropreate.
checkDefaultPath(String)
- Method in class com.sshtools.daemon.sftp.
SftpSubsystemServer
checkFields
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
checkFingerprint(String, String)
- Method in class com.sshtools.common.hosts.
AbstractHostKeyVerification
checkingEnabled
- Variable in class com.sshtools.common.ui.
NumericTextField.ADocument
checkKey(String, SshPublicKey)
- Method in class com.sshtools.j2ssh.transport.
AbstractKnownHostsKeyVerification
checkValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.BinSelectPanel
checkValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.ListSelectPanel
checkValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.TextSelectPanel
chgrp(int, String)
- Method in class com.sshtools.j2ssh.
SftpClient
Sets the group ID for the file or directory.
children
- Variable in class com.sshtools.daemon.vfs.
VirtualFileSystem.OpenDirectory
childrenFile(String[], DefaultMutableTreeNode)
- Method in class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
childrenOp(String, DefaultMutableTreeNode)
- Method in class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
chmod(int, String)
- Method in class com.sshtools.j2ssh.
SftpClient
Changes the access permissions or modes of the specified file or directory.
chooseCustomColor()
- Method in class com.sshtools.common.ui.
ColorComboBox
chooser
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog.myActionListener
A GCFileChooser that selects the file
chown(int, String)
- Method in class com.sshtools.j2ssh.
SftpClient
Sets the user ID to owner for the file or directory.
chrButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
chrCBox
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
CI_DEFAULT
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleAssoc
The default ci parameter is 0.95
CI_DEFAULT
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
CI_DEFAULT
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
CI_DEFAULT
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
ciButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleAssoc
Flag the ci option
ciButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
ciButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
ciButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
cipher
- Variable in class com.sshtools.j2ssh.transport.cipher.
BlowfishCbc
cipher
- Variable in class com.sshtools.j2ssh.transport.cipher.
TripleDesCbc
cipher
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolAlgorithmSync
cipher
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolInputStream
cipherExtensions
- Variable in class com.sshtools.common.configuration.
SshAPIConfiguration
cipherExtensions
- Variable in class com.sshtools.daemon.configuration.
SshAPIConfiguration
cipherlen
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolInputStream
ciphers
- Static variable in class com.sshtools.j2ssh.transport.cipher.
SshCipherFactory
ciText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleAssoc
Allow the user to set the --ci parameter
ciText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
ciText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
ciText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
classpath
- Variable in class com.sshtools.j2ssh.util.
DynamicClassLoader
classpath
- Variable in class com.sshtools.j2ssh.util.
ExtensionClassLoader
cleanUp()
- Method in class com.sshtools.common.mru.
MRUMenu
clear()
- Method in class com.sshtools.daemon.terminal.
CharBuffer
clear()
- Method in class com.sshtools.daemon.terminal.
Editline
clear()
- Method in class com.sshtools.daemon.terminal.
UserInput
clearAuthenticationCache()
- Method in class com.sshtools.common.configuration.
SshToolsConnectionProfile
CLIENT_PARAMETER_INFO
- Static variable in class com.sshtools.common.ui.
SshToolsApplicationClientApplet
clientId
- Variable in class com.sshtools.j2ssh.transport.kex.
DhGroup1Sha1
clientIdent
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
clientKexInit
- Variable in class com.sshtools.j2ssh.transport.kex.
DhGroup1Sha1
clientKexInit
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
clientUser
- Variable in class com.sshtools.j2ssh.authentication.
HostbasedAuthenticationClient
cline
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
OperationInfo
A String that holds the command line for this operation.
cline
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
The JTextField that holds the commandline
CLINE_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
key word for the command line attributes
clineText
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
cloneThread(Runnable, String)
- Method in class com.sshtools.j2ssh.
SshThread
Create's a cloned copy of this thread with the given target and name.
close
- Variable in class com.sshtools.common.keygen.
Main
close()
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel
Called by the application framework to close the panel
close()
- Method in class com.sshtools.daemon.terminal.
TerminalIO
close()
- Method in class com.sshtools.j2ssh.agent.
SshAgentClient
Close the agent
close()
- Method in class com.sshtools.j2ssh.connection.
Channel
close()
- Method in class com.sshtools.j2ssh.connection.
ChannelInputStream
close()
- Method in class com.sshtools.j2ssh.connection.
ChannelOutputStream
close()
- Method in class com.sshtools.j2ssh.io.
DynamicBuffer
Closes the buffer
close()
- Method in class com.sshtools.j2ssh.io.
DynamicBuffer.DynamicBufferInputStream
close()
- Method in class com.sshtools.j2ssh.io.
DynamicBuffer.DynamicBufferOutputStream
close()
- Method in class com.sshtools.j2ssh.io.
IOStreamConnector
close()
- Method in class com.sshtools.j2ssh.net.
ConnectedSocketTransportProvider
close()
- Method in interface com.sshtools.j2ssh.net.
TransportProvider
close()
- Method in class com.sshtools.j2ssh.
ScpClient.ScpInputStream
close()
- Method in class com.sshtools.j2ssh.sftp.
SftpFile
close()
- Method in class com.sshtools.j2ssh.sftp.
SftpFileInputStream
close()
- Method in class com.sshtools.j2ssh.sftp.
SftpFileOutputStream
close()
- Method in class com.sshtools.j2ssh.subsystem.
SubsystemMessageStore
close()
- Method in class com.sshtools.j2ssh.transport.
SshMessageStore
Closes the store.
close()
- Method in class com.sshtools.j2ssh.util.
Base64.OutputStream
close
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
CloseAction
- Class in
com.sshtools.common.ui
CloseAction()
- Constructor for class com.sshtools.common.ui.
CloseAction
Creates a new CloseAction object.
closeButtons()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
closeChannel(Channel)
- Method in class com.sshtools.j2ssh.connection.
ConnectionProtocol
closeConnection(boolean)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
closeContainer(SshToolsApplicationContainer)
- Method in class com.sshtools.common.ui.
SshToolsApplication
closeContainer()
- Method in class com.sshtools.common.ui.
SshToolsApplicationApplet.SshToolsApplicationAppletContainer
closeContainer()
- Method in interface com.sshtools.common.ui.
SshToolsApplicationContainer
closeContainer()
- Method in class com.sshtools.common.ui.
SshToolsApplicationFrame
closeContainer()
- Method in class com.sshtools.common.ui.
SshToolsApplicationInternalFrame
closed(ForwardingConfiguration, ForwardingChannel)
- Method in interface com.sshtools.j2ssh.forwarding.
ForwardingConfigurationListener
closed
- Variable in class com.sshtools.j2ssh.io.
DynamicBuffer
CLOSED
- Static variable in class com.sshtools.j2ssh.io.
IOStreamConnectorState
CLOSED
- Static variable in class com.sshtools.j2ssh.util.
OpenClosedState
closeDialog
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
closeFile(byte[])
- Method in class com.sshtools.daemon.platform.
NativeFileSystemProvider
closeFile(byte[])
- Method in class com.sshtools.daemon.vfs.
VirtualFileSystem
closeFile(SftpFile)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
closeForm
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
Close everything up nicely
closeHandle(byte[])
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
closeInput()
- Method in class com.sshtools.daemon.terminal.
TerminalIO
closeInput
- Variable in class com.sshtools.j2ssh.io.
IOStreamConnector
closeOutput()
- Method in class com.sshtools.daemon.terminal.
TerminalIO
closeOutput
- Variable in class com.sshtools.j2ssh.io.
IOStreamConnector
closeStream(InputStream)
- Static method in class com.sshtools.j2ssh.io.
IOUtil
closeStream(OutputStream)
- Static method in class com.sshtools.j2ssh.io.
IOUtil
closing
- Variable in class com.sshtools.daemon.terminal.
TerminalIO
closing
- Variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
An ActionListener that closers the gui.
cls
- Variable in class com.sshtools.common.ui.
ResourceIcon
cls
- Variable in class com.sshtools.common.ui.
SessionProvider
cls
- Static variable in class com.sshtools.daemon.platform.
NativeAuthenticationProvider
clsLoader
- Static variable in class com.sshtools.j2ssh.configuration.
ConfigurationLoader
Clustering
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
Form for the clustering command --cluster
Clustering(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
create a show a new Clustering Form
cmd
- Variable in class com.sshtools.j2ssh.
ScpClient.ScpChannel
collectNextMessage()
- Method in class com.sshtools.j2ssh.connection.
ChannelInputStream
collectNextMessage()
- Method in class com.sshtools.j2ssh.subsystem.
SubsystemInputStream
collectParts(List, StringTokenizer)
- Method in class com.sshtools.daemon.util.
StringUtil
collectParts(List, StringTokenizer, String)
- Method in class com.sshtools.daemon.util.
StringUtil
color
- Variable in class com.sshtools.common.ui.
ColorIcon
color
- Variable in class com.sshtools.daemon.terminal.
TerminalIO
ColorComboBox
- Class in
com.sshtools.common.ui
ColorComboBox()
- Constructor for class com.sshtools.common.ui.
ColorComboBox
Creates a new ColorComboBox object.
ColorComboBox(Color)
- Constructor for class com.sshtools.common.ui.
ColorComboBox
Creates a new ColorComboBox object.
ColorComboBox.ColorComboModel
- Class in
com.sshtools.common.ui
ColorComboBox.ColorComboModel()
- Constructor for class com.sshtools.common.ui.
ColorComboBox.ColorComboModel
ColorComboBox.ColorRenderer
- Class in
com.sshtools.common.ui
ColorComboBox.ColorRenderer()
- Constructor for class com.sshtools.common.ui.
ColorComboBox.ColorRenderer
ColorHelper
- Class in
com.sshtools.daemon.terminal
ColorHelper()
- Constructor for class com.sshtools.daemon.terminal.
ColorHelper
ColorIcon
- Class in
com.sshtools.common.ui
ColorIcon()
- Constructor for class com.sshtools.common.ui.
ColorIcon
Creates a new ColorIcon object.
ColorIcon(Color)
- Constructor for class com.sshtools.common.ui.
ColorIcon
Creates a new ColorIcon object.
ColorIcon(Color, Color)
- Constructor for class com.sshtools.common.ui.
ColorIcon
Creates a new ColorIcon object.
ColorIcon(Color, Dimension, Color)
- Constructor for class com.sshtools.common.ui.
ColorIcon
Creates a new ColorIcon object.
COLORINIT
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
colorize(String, boolean)
- Method in class com.sshtools.daemon.terminal.
Colorizer
colorizeBackground(String, String)
- Static method in class com.sshtools.daemon.terminal.
ColorHelper
Colorizer
- Class in
com.sshtools.daemon.terminal
Colorizer()
- Constructor for class com.sshtools.daemon.terminal.
Colorizer
colorizeText(String, String)
- Static method in class com.sshtools.daemon.terminal.
ColorHelper
colorizeText(String, String, String)
- Static method in class com.sshtools.daemon.terminal.
ColorHelper
colors
- Variable in class com.sshtools.common.ui.
ColorComboBox.ColorComboModel
colorToString(Color)
- Static method in class com.sshtools.common.util.
GeneralUtil
Return a string representation of a color
colorToString(Color)
- Static method in class com.sshtools.common.util.
PropertyUtil
colortranslation
- Variable in class com.sshtools.daemon.terminal.
Colorizer
cols
- Variable in class com.sshtools.daemon.session.
PseudoTerminalWrapper
cols
- Variable in class com.sshtools.daemon.terminal.
TerminalIO
com.sshtools.common.authentication
- package com.sshtools.common.authentication
com.sshtools.common.automate
- package com.sshtools.common.automate
com.sshtools.common.configuration
- package com.sshtools.common.configuration
com.sshtools.common.hosts
- package com.sshtools.common.hosts
com.sshtools.common.keygen
- package com.sshtools.common.keygen
com.sshtools.common.mru
- package com.sshtools.common.mru
com.sshtools.common.ui
- package com.sshtools.common.ui
com.sshtools.common.util
- package com.sshtools.common.util
com.sshtools.daemon
- package com.sshtools.daemon
com.sshtools.daemon.authentication
- package com.sshtools.daemon.authentication
com.sshtools.daemon.configuration
- package com.sshtools.daemon.configuration
com.sshtools.daemon.forwarding
- package com.sshtools.daemon.forwarding
com.sshtools.daemon.platform
- package com.sshtools.daemon.platform
com.sshtools.daemon.scp
- package com.sshtools.daemon.scp
com.sshtools.daemon.session
- package com.sshtools.daemon.session
com.sshtools.daemon.sftp
- package com.sshtools.daemon.sftp
com.sshtools.daemon.subsystem
- package com.sshtools.daemon.subsystem
com.sshtools.daemon.terminal
- package com.sshtools.daemon.terminal
com.sshtools.daemon.transport
- package com.sshtools.daemon.transport
com.sshtools.daemon.util
- package com.sshtools.daemon.util
com.sshtools.daemon.vfs
- package com.sshtools.daemon.vfs
com.sshtools.j2ssh
- package com.sshtools.j2ssh
com.sshtools.j2ssh.agent
- package com.sshtools.j2ssh.agent
com.sshtools.j2ssh.authentication
- package com.sshtools.j2ssh.authentication
com.sshtools.j2ssh.configuration
- package com.sshtools.j2ssh.configuration
com.sshtools.j2ssh.connection
- package com.sshtools.j2ssh.connection
com.sshtools.j2ssh.forwarding
- package com.sshtools.j2ssh.forwarding
com.sshtools.j2ssh.io
- package com.sshtools.j2ssh.io
com.sshtools.j2ssh.net
- package com.sshtools.j2ssh.net
com.sshtools.j2ssh.openssh
- package com.sshtools.j2ssh.openssh
com.sshtools.j2ssh.session
- package com.sshtools.j2ssh.session
com.sshtools.j2ssh.sftp
- package com.sshtools.j2ssh.sftp
com.sshtools.j2ssh.subsystem
- package com.sshtools.j2ssh.subsystem
com.sshtools.j2ssh.transport
- package com.sshtools.j2ssh.transport
com.sshtools.j2ssh.transport.cipher
- package com.sshtools.j2ssh.transport.cipher
com.sshtools.j2ssh.transport.compression
- package com.sshtools.j2ssh.transport.compression
com.sshtools.j2ssh.transport.hmac
- package com.sshtools.j2ssh.transport.hmac
com.sshtools.j2ssh.transport.kex
- package com.sshtools.j2ssh.transport.kex
com.sshtools.j2ssh.transport.publickey
- package com.sshtools.j2ssh.transport.publickey
com.sshtools.j2ssh.transport.publickey.dsa
- package com.sshtools.j2ssh.transport.publickey.dsa
com.sshtools.j2ssh.transport.publickey.rsa
- package com.sshtools.j2ssh.transport.publickey.rsa
com.sshtools.j2ssh.util
- package com.sshtools.j2ssh.util
command
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
RunCommand
command
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
command
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Execute
A JTextField that holds the command we wish to pass to the computer.
COMMAND_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
command key
COMMAND_PREFIX_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
PLINK prefix key
commandPort
- Variable in class com.sshtools.daemon.configuration.
ServerConfiguration
commandServerSocket
- Variable in class com.sshtools.daemon.
SshServer
commandsToExecute
- Variable in class com.sshtools.common.configuration.
SshToolsConnectionProfile.XMLHandler
comment
- Variable in class com.sshtools.j2ssh.transport.publickey.
OpenSSHPublicKeyFormat
comment
- Variable in class com.sshtools.j2ssh.transport.publickey.
SshPublicKeyFile
COMP_NONE
- Static variable in class com.sshtools.j2ssh.transport.compression.
SshCompressionFactory
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel.MenuItemActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel.ToolBarActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel.ContextActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel.MenuItemActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel.ToolBarActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationSessionPanel.MenuItemActionComparator
compare(Object, Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationSessionPanel.ToolBarActionComparator
compareTo(Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel.ActionMenu
compareTo(Object)
- Method in class com.sshtools.common.ui.
SshToolsApplicationPanel.ActionMenu
compareTo(Object)
- Method in class com.sshtools.j2ssh.io.
UnsignedInteger64
compareTo(Object)
- Method in class com.sshtools.j2ssh.sftp.
SftpFile
compat
- Variable in class com.sshtools.j2ssh.agent.
KeyConstraints
COMPLETE
- Static variable in class com.sshtools.j2ssh.authentication.
AuthenticationProtocolState
COMPLETE
- Static variable in class com.sshtools.j2ssh.transport.kex.
KeyExchangeState
COMPLETE
- Static variable in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater
Flags a completed operation
completed
- Variable in class com.sshtools.daemon.authentication.
AuthenticationProtocolServer
completed()
- Method in interface com.sshtools.j2ssh.
FileTransferProgress
completedAuthentications
- Variable in class com.sshtools.daemon.authentication.
AuthenticationProtocolServer
completeKeyExchange()
- Method in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
completeOnNewKeys
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
compress(byte[], int, int)
- Method in interface com.sshtools.j2ssh.transport.compression.
SshCompression
compression
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolAlgorithmSync
compression
- Variable in class com.sshtools.j2ssh.transport.
TransportProtocolInputStream
COMPRESSION_ERROR
- Static variable in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
compressionExtensions
- Variable in class com.sshtools.common.configuration.
SshAPIConfiguration
compressionExtensions
- Variable in class com.sshtools.daemon.configuration.
SshAPIConfiguration
comps
- Static variable in class com.sshtools.j2ssh.transport.compression.
SshCompressionFactory
config
- Variable in class com.sshtools.daemon.session.
SessionChannelServer
config
- Variable in class com.sshtools.daemon.transport.
TransportProtocolServer
config
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
ConfigurationContext
- Interface in
com.sshtools.j2ssh.configuration
ConfigurationException
- Exception in
com.sshtools.j2ssh.configuration
ConfigurationException(String)
- Constructor for exception com.sshtools.j2ssh.configuration.
ConfigurationException
Creates a new ConfigurationException object.
ConfigurationLoader
- Class in
com.sshtools.j2ssh.configuration
ConfigurationLoader()
- Constructor for class com.sshtools.j2ssh.configuration.
ConfigurationLoader
ConfigurationLoader.DefaultConfigurationContext
- Class in
com.sshtools.j2ssh.configuration
ConfigurationLoader.DefaultConfigurationContext()
- Constructor for class com.sshtools.j2ssh.configuration.
ConfigurationLoader.DefaultConfigurationContext
configurations
- Variable in class com.sshtools.common.configuration.
XmlConfigurationContext
configurations
- Variable in class com.sshtools.daemon.configuration.
XmlServerConfigurationContext
Configure
- Class in
edu.harvard.mgh.purcell.gCLINE.general
Configure local and remote parameters.
Configure(Record)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.general.
Configure
Create a configuration dialog that edits the configuration of the current record.
configureNewLocation()
- Static method in class com.sshtools.j2ssh.agent.
SshAgentSocketListener
Configure a new random port for the agent listener.
configureServices(ConnectionProtocol)
- Method in class com.sshtools.daemon.
SshServer
configureUserAccess(SftpClient, String, String, String, SshPublicKey, String, int)
- Method in class com.sshtools.common.automate.
RemoteIdentification
configureUserAccess(SftpClient, String, String, String, List, String, int)
- Method in class com.sshtools.common.automate.
RemoteIdentification
confirm
- Variable in class com.sshtools.common.authentication.
PasswordChange.PasswordChangeDialog
conn
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Record
A String that holds the ssh connection.
conn
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
RunCommand
conn
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
conn
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
conn
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
A SshClient that is used to open the remote browser.
connect(SshToolsConnectionProfile, boolean)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
connect(SshClient, SshToolsConnectionProfile)
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
connect()
- Method in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
connect(InputStream, OutputStream)
- Method in class com.sshtools.j2ssh.io.
IOStreamConnector
CONNECT
- Static variable in class com.sshtools.j2ssh.net.
SocksProxySocket
connect(String)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server using default connection properties.
connect(String, HostKeyVerification)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server using the default connection properties.
connect(String, int)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server on a specified port with default connection properties.
connect(String, int, HostKeyVerification)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server on a specified port with default connection properties.
connect(SshConnectionProperties)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server with the specified properties.
connect(SshConnectionProperties, HostKeyVerification)
- Method in class com.sshtools.j2ssh.
SshClient
Connect the client to the server with the specified properties.
connect()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
connect(ErrorManager, JFrame, String, String, int)
- Static method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
Connect the ssh client.
CONNECT_ICON
- Static variable in class com.sshtools.common.ui.
SshToolsConnectionHostTab
connectAgentSocket(String)
- Static method in class com.sshtools.j2ssh.agent.
SshAgentClient
Connect a socket to the agent at the location specified.
connected
- Variable in class com.sshtools.common.ui.
StatusBar
CONNECTED
- Static variable in class com.sshtools.j2ssh.io.
IOStreamConnectorState
CONNECTED
- Static variable in class com.sshtools.j2ssh.transport.
TransportProtocolState
ConnectedSocketTransportProvider
- Class in
com.sshtools.j2ssh.net
ConnectedSocketTransportProvider(Socket)
- Constructor for class com.sshtools.j2ssh.net.
ConnectedSocketTransportProvider
Creates a new ConnectedSocketTransportProvider object.
connectImmediately
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientApplet
connection
- Variable in class com.sshtools.daemon.forwarding.
ForwardingServer
connection
- Variable in class com.sshtools.j2ssh.agent.
SshAgentForwardingListener
connection
- Variable in class com.sshtools.j2ssh.connection.
Channel
connection
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingClient
connection
- Variable in class com.sshtools.j2ssh.forwarding.
ForwardingListener
connection
- Variable in class com.sshtools.j2ssh.
SshClient
The SSH Connection protocol implementation for this SSH client.
CONNECTION_LOST
- Static variable in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
connectionFile
- Variable in class com.sshtools.common.configuration.
SshToolsConnectionProfile
connectionFileFilter
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
connectionProfileLocation
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientApplet
ConnectionPropertiesAction
- Class in
com.sshtools.common.ui
ConnectionPropertiesAction()
- Constructor for class com.sshtools.common.ui.
ConnectionPropertiesAction
Creates a new ConnectionPropertiesAction object.
ConnectionProtocol
- Class in
com.sshtools.j2ssh.connection
ConnectionProtocol()
- Constructor for class com.sshtools.j2ssh.connection.
ConnectionProtocol
Creates a new ConnectionProtocol object.
connectLocalAgent(String, String)
- Static method in class com.sshtools.j2ssh.agent.
SshAgentClient
Connect to the local agent.
connectTransportProvider(SshConnectionProperties, int)
- Static method in class com.sshtools.j2ssh.net.
TransportProviderFactory
connectViaProxy(String, int, String, int, String, String, String)
- Static method in class com.sshtools.j2ssh.net.
HttpProxySocketProvider
connectViaProxy(String, int, String, int, String, String, String, String)
- Static method in class com.sshtools.j2ssh.net.
HttpProxySocketProvider
connectViaSocks4Proxy(String, int, String, int, String)
- Static method in class com.sshtools.j2ssh.net.
SocksProxySocket
connectViaSocks5Proxy(String, int, String, int, boolean, String, String)
- Static method in class com.sshtools.j2ssh.net.
SocksProxySocket
connectViaSocks5Proxy(String, int, String, int, String, String)
- Static method in class com.sshtools.j2ssh.net.
SocksProxySocket
ConsoleHostKeyVerification
- Class in
com.sshtools.common.hosts
ConsoleHostKeyVerification()
- Constructor for class com.sshtools.common.hosts.
ConsoleHostKeyVerification
Creates a new ConsoleHostKeyVerification object.
ConsoleHostKeyVerification(String)
- Constructor for class com.sshtools.common.hosts.
ConsoleHostKeyVerification
Creates a new ConsoleHostKeyVerification object.
ConsoleKnownHostsKeyVerification
- Class in
com.sshtools.j2ssh.transport
Implements the
AbstractKnownHostsKeyVerification
to provide host key verification through the console.
ConsoleKnownHostsKeyVerification()
- Constructor for class com.sshtools.j2ssh.transport.
ConsoleKnownHostsKeyVerification
Constructs the verification instance with the default known_hosts file from $HOME/.ssh/known_hosts.
ConsoleKnownHostsKeyVerification(String)
- Constructor for class com.sshtools.j2ssh.transport.
ConsoleKnownHostsKeyVerification
Constructs the verification instance with the specified known_hosts file.
constraints
- Variable in class com.sshtools.common.ui.
MultilineLabel
constraints
- Variable in class com.sshtools.j2ssh.agent.
KeyStore
constraints
- Variable in class com.sshtools.j2ssh.agent.
SshAgentAddKey
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentAddKey
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentAlive
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentDeleteAllKeys
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentDeleteKey
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentFailure
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentForwardingNotice
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentKeyList
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentListKeys
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentLock
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentOperationComplete
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentPing
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentPrivateKeyOp
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRandom
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRandomData
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRequestVersion
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentSuccess
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentUnlock
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.agent.
SshAgentVersionResponse
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthBanner
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthFailure
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthInfoRequest
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthInfoResponse
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthPKOK
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthPwdChangeReq
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthRequest
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthSuccess
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelClose
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelData
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelEOF
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelExtendedData
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelFailure
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpen
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpenConfirmation
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpenFailure
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelRequest
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelSuccess
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelWindowAdjust
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgGlobalRequest
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgRequestFailure
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.connection.
SshMsgRequestSuccess
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpAttrs
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpClose
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpData
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpFSetStat
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpFStat
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpHandle
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpInit
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpLStat
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpMkdir
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpName
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpOpen
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpOpenDir
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRead
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpReadDir
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpReadlink
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRealPath
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRemove
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRename
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRmdir
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpSetStat
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpStat
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpStatus
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpSymlink
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpVersion
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpWrite
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.subsystem.
SubsystemMessage
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.kex.
SshMsgKexDhInit
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.kex.
SshMsgKexDhReply
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMessage
Message implementations should implement this method, writing the data as exected in the transport protocol message format.
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgDebug
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgIgnore
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgKexInit
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgNewKeys
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgServiceAccept
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgServiceRequest
constructByteArray(ByteArrayWriter)
- Method in class com.sshtools.j2ssh.transport.
SshMsgUnimplemented
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentAddKey
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentAlive
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentDeleteAllKeys
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentDeleteKey
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentFailure
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentForwardingNotice
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentKeyList
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentListKeys
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentLock
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentOperationComplete
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentPing
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentPrivateKeyOp
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRandom
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRandomData
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentRequestVersion
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentSuccess
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentUnlock
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.agent.
SshAgentVersionResponse
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthBanner
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthFailure
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthInfoRequest
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthInfoResponse
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthPKOK
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthPwdChangeReq
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthRequest
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.authentication.
SshMsgUserAuthSuccess
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelClose
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelData
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelEOF
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelExtendedData
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelFailure
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpen
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpenConfirmation
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelOpenFailure
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelRequest
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelSuccess
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgChannelWindowAdjust
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgGlobalRequest
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgRequestFailure
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.connection.
SshMsgRequestSuccess
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpAttrs
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpClose
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpData
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpFSetStat
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpFStat
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpHandle
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpInit
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpLStat
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpMkdir
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpName
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpOpen
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpOpenDir
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRead
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpReadDir
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpReadlink
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRealPath
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRemove
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRename
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpRmdir
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpSetStat
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpStat
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpStatus
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpSymlink
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpVersion
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.sftp.
SshFxpWrite
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.subsystem.
SubsystemMessage
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.kex.
SshMsgKexDhInit
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.kex.
SshMsgKexDhReply
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMessage
Message implementation should implement this method, reading the data as expected in the transport protocol message format.
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgDebug
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgDisconnect
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgIgnore
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgKexInit
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgNewKeys
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgServiceAccept
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgServiceRequest
constructMessage(ByteArrayReader)
- Method in class com.sshtools.j2ssh.transport.
SshMsgUnimplemented
consumeWindowSpace(int)
- Method in class com.sshtools.j2ssh.connection.
ChannelDataWindow
container
- Variable in class com.sshtools.common.ui.
ExitAction
container
- Variable in class com.sshtools.common.ui.
SshToolsApplicationPanel
containers
- Static variable in class com.sshtools.common.ui.
SshToolsApplication
contains(String[], String, boolean)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns whether or not the specified string can be found in the given string array.
contains(String[], StringPattern)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns whether or not a string can be found in the given string array that matches the specified string pattern.
contains(String[], String)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns whether or not the specified string can be found in the given string array.
CONTAINS_ATTRIBUTE
- Variable in class com.sshtools.common.automate.
AutomationConfiguration.AutomationConfigurationSAXHandler
containsChannelFactory(String)
- Method in class com.sshtools.j2ssh.connection.
ConnectionProtocol
containsFile(File)
- Method in class com.sshtools.j2ssh.
DirectoryOperation
containsFile(SftpFile)
- Method in class com.sshtools.j2ssh.
DirectoryOperation
containsIgnoreCase(String[], String)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns whether or not the specified string can be found in the given string array.
containsKey(SshPublicKey)
- Method in class com.sshtools.common.automate.
AuthorizedKeys
containsProperty(String)
- Method in class com.sshtools.j2ssh.
SshThread
Determine if this thread contains the given property.
containsSetting(String)
- Method in class com.sshtools.daemon.configuration.
PlatformConfiguration
contentsChanged(ListDataEvent)
- Method in class com.sshtools.common.mru.
MRUMenu
CONTEXT_MENU_GROUP
- Static variable in class com.sshtools.common.ui.
StandardAction
CONTEXT_MENU_WEIGHT
- Static variable in class com.sshtools.common.ui.
StandardAction
contextMenu
- Variable in class com.sshtools.common.ui.
SshToolsApplicationPanel
contexts
- Static variable in class com.sshtools.j2ssh.configuration.
ConfigurationLoader
CONVERT_IETF_SECSH_TO_OPENSSH
- Static variable in class com.sshtools.common.keygen.
KeygenPanel
CONVERT_IETF_SECSH_TO_OPENSSH
- Static variable in class com.sshtools.common.keygen.
KeygenPanel2
CONVERT_OPENSSH_TO_IETF_SECSH
- Static variable in class com.sshtools.common.keygen.
KeygenPanel
CONVERT_OPENSSH_TO_IETF_SECSH
- Static variable in class com.sshtools.common.keygen.
KeygenPanel2
convertContainer(SshToolsApplicationContainer, Class)
- Method in class com.sshtools.common.ui.
SshToolsApplication
convertPublicKeyFile(File, SshPublicKeyFormat)
- Static method in class com.sshtools.j2ssh.transport.publickey.
SshKeyGenerator
cookie
- Variable in class com.sshtools.j2ssh.transport.publickey.
SshtoolsPrivateKeyFormat
cookie
- Variable in class com.sshtools.j2ssh.transport.
SshMsgKexInit
copyAction
- Variable in class com.sshtools.common.ui.
XTextField
copyFile(File, File)
- Static method in class com.sshtools.j2ssh.io.
IOUtil
copyFrom(String[], int)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns all elements of string array
from
in a new array from index start up to the end.
copyFrom(String[], int, int)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns all elements of string array
from
in a new array from index start up to index end (inclusive).
copyLocalDirectory(String, String, boolean, boolean, boolean, FileTransferProgress)
- Method in class com.sshtools.j2ssh.
SftpClient
copyRemoteDirectory(String, String, boolean, boolean, boolean, FileTransferProgress)
- Method in class com.sshtools.j2ssh.
SftpClient
count
- Variable in class com.sshtools.j2ssh.
ScpClient.ScpInputStream
countButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleFreq
Buttons that allow the user to select the --count
covarButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Regression
covarField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Regression
coverFile
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
QuantTrtInt
The covarienance file associated with this test
CR
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
cr
- Variable in class com.sshtools.daemon.terminal.
TerminalIO
create(AuthorizedKeys, String, String, AuthorizedKeysFileSaver)
- Static method in class com.sshtools.common.automate.
AuthorizedKeys
create(SshPrivateKey, String, SshPrivateKeyFormat)
- Static method in class com.sshtools.j2ssh.transport.publickey.
SshPrivateKeyFile
create(SshPublicKey, SshPublicKeyFormat)
- Static method in class com.sshtools.j2ssh.transport.publickey.
SshPublicKeyFile
create()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
createAltEditor()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
Configure
Create a JPanel that contains alternative editor
createAltPheno()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Create a JPanel that contains the alternative phenotype options.
createApplicationPanel()
- Method in class com.sshtools.common.ui.
SshToolsApplicationApplet
createBinary()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Create a JPanel that has the binary input options.
createBinary()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.BinSelectPanel
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
Create the body for this form.
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleAssoc
create the body specific to this form.
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleFreq
Create the body for this form.
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Basic
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
create the body of the form
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
GenFileSet
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HardyWinEq
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
IBSdist
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
IndHetz
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
MendelErr
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Missing
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
NearNeigh
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
QuantTrtInt
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Regression
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
SetAssoc
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
createBody()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Validate
createButton()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
Configure
Create a panel that has both the ok and cancel buttons.
createButton()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
Create a button panel for the remote dialog.
createButton()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Create a panel to hold the butttons.
createButton()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Create a panel to hold the butttons.
createButtonPane()
- Method in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
Create a panel to hold the ok/cancel buttons.
createButtonPane()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
Create a JPanel that holds the ok/cancel buttons for this form.
createButtons()
- Method in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
createButtons()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Import
Create the JButtons for this form.
createButtonsPanel()
- Method in class edu.harvard.mgh.purcell.gCLINE.
DeleteOpDialog
Create a JPanel that holds the buttons for this dialog.
createChannel(String, byte[])
- Method in class com.sshtools.daemon.forwarding.
ForwardingServer
createChannel(String, int, Socket)
- Method in class com.sshtools.daemon.forwarding.
ForwardingServer.ServerForwardingListener
createChannel(String, byte[])
- Method in class com.sshtools.daemon.session.
SessionChannelFactory
createChannel(String, byte[])
- Method in interface com.sshtools.j2ssh.connection.
ChannelFactory
createChannel(String, int, Socket)
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingClient.ClientForwardingListener
createChannel(String, byte[])
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingClient
createChannel(String, int, Socket)
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingListener
createConnection()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Create a panel that holds the connection information.
createConnection()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Create a panel that holds the connection information.
createContent(DefaultListModel)
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
createCookie(String)
- Static method in class com.sshtools.common.util.
X11Util
createDelimString(List)
- Method in class com.sshtools.j2ssh.transport.
SshMsgKexInit
createError(String, String)
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
ErrorManager
Create an error message with a citation.
createExicute()
- Method in class edu.harvard.mgh.purcell.gCLINE.
PopUpMenu
createExicute()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myPopUpMenu
createExicute()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK.myPopUpMenu
createFileList()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
createFilePane()
- Method in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
Create the panel that holds the file text box and corrisponding browse button.
createFilePanel(String[], boolean)
- Method in class edu.harvard.mgh.purcell.gCLINE.
DeleteOpDialog
Find files attached to all the operaitons and initalize the appropreate panels.
createFiles()
- Method in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
createFormsMenu()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
MenuBarMain
Create the menu for command specific forms.
createFormsMenu()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
Create the menu for command specific forms.
createFormSpecific()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
Configure
createFormSpecific()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.StartFrameConfig
createFormSpecific()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
Layout the PLINK configuration fields.
createForwardingBindingChannel(String, String, int, String, int)
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingConfiguration
createForwardingIOChannel(String, String, int, String, int)
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingConfiguration
createForwardingSocketChannel(String, String, int, String, int)
- Method in class com.sshtools.j2ssh.forwarding.
ForwardingConfiguration
createHaplo()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
Layout the haploview configuration field.
createImageIcon(String)
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK.myOpView
Intelligently create an image URL
createInOutPane()
- Method in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
Create a JPanel that allows the user to select the file as either an input or output file.
createLocal()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Create the panel that holds the local project field and associated button.
createLocal()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Create the panel that holds the local project field and associated button.
createLocalKexInit()
- Method in class com.sshtools.daemon.transport.
TransportProtocolServer
createLocalKexInit()
- Method in class com.sshtools.j2ssh.transport.
TransportProtocolCommon
createMergeTarget()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
createMessage(byte[])
- Method in class com.sshtools.j2ssh.transport.
SshMessageStore
Create a formed message from raw message data.
createMessage(String, String)
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
ErrorManager
Create a message with a citation.
createOpPanel(String[])
- Method in class edu.harvard.mgh.purcell.gCLINE.
DeleteOpDialog
Creat a Panel that has all the operation names with the check box to flag confirmation of deletion
createOptionDialog(JComponent, Option[], Object, String, Option, OptionCallback, Icon)
- Static method in class com.sshtools.common.ui.
OptionsDialog
createOptions()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
createPanel()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.ListSelectPanel
createPanel()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
Intialize and layout the panel.
createPlink()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
Layout the plink configuration fields.
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myFolderView
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myOpView
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK.myFolderView
createPopUp(StartFrame, Record, String[], String[])
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK.myOpView
createProcess(String, Map)
- Method in class com.sshtools.daemon.platform.
NativeProcessProvider
createProcess(String, Map)
- Method in class com.sshtools.daemon.scp.
ScpServer
createProjectMenu()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
MenuBarMain
Create the menu for general project operatoins.
createProjectMenu()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
Create the menu for general project operatoins.
createRecodeOps()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
createRemote()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Create a panel that holds the remote project name.
createRemote()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Create a panel that holds the remote project name.
createRemoteFlag()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Create a panel to hold the remote flag.
createRemoteFlag()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Create a panel to hold the remote flag.
createRoots()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Import
Create a JPanel that contains the JComboBox with the appropreate file root options.
createSession(Socket)
- Method in class com.sshtools.daemon.
SshServer
createStd()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Create JPanel that contains the options for a standard text input files.
createStd()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.TextSelectPanel
createSymbolicLink(String, String)
- Method in class com.sshtools.daemon.platform.
NativeFileSystemProvider
createSymbolicLink(String, String)
- Method in class com.sshtools.daemon.vfs.
VirtualFileSystem
createSymbolicLink(String, String)
- Method in class com.sshtools.j2ssh.sftp.
SftpSubsystemClient
createtime
- Variable in class com.sshtools.j2ssh.sftp.
FileAttributes
createTree()
- Method in class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
createUpdate()
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
Configure
CRLF
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
CROSS_PLATFORM_LAF
- Static variable in class com.sshtools.common.ui.
SshToolsApplication
crtCoefficient
- Variable in class com.sshtools.j2ssh.openssh.
RSAKeyInfo
CS7
- Static variable in interface com.sshtools.j2ssh.session.
PseudoTerminal
CS8
- Static variable in interface com.sshtools.j2ssh.session.
PseudoTerminal
cText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
current()
- Static method in class com.sshtools.daemon.util.
StringUtil
Returns the one and only instance of this class.
currentAuthentication
- Variable in class com.sshtools.common.configuration.
SshToolsConnectionProfile
currentConnectionFile
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
currentConnectionProfile
- Variable in class com.sshtools.common.ui.
SshToolsApplicationClientPanel
currentConnectionProfile
- Variable in class com.sshtools.common.ui.
SshToolsApplicationSessionPanel
currentDir
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
currentDirectory
- Variable in class com.sshtools.daemon.scp.
ScpServer
currentElement
- Variable in class com.sshtools.common.automate.
AutomationConfiguration.AutomationConfigurationSAXHandler
currentElement
- Variable in class com.sshtools.common.configuration.
Authorization.AuthorizedKeysSAXHandler
currentElement
- Variable in class com.sshtools.common.configuration.
SshAPIConfiguration
currentElement
- Variable in class com.sshtools.common.configuration.
SshToolsConnectionProfile
currentElement
- Variable in class com.sshtools.common.hosts.
AbstractHostKeyVerification
currentElement
- Variable in class com.sshtools.common.mru.
MRUList
currentElement
- Variable in class com.sshtools.daemon.configuration.
PlatformConfiguration
currentElement
- Variable in class com.sshtools.daemon.configuration.
ServerConfiguration
currentElement
- Variable in class com.sshtools.daemon.configuration.
SshAPIConfiguration
currentExt
- Variable in class com.sshtools.common.configuration.
SshAPIConfiguration
currentExt
- Variable in class com.sshtools.daemon.configuration.
SshAPIConfiguration
currentFile
- Variable in class com.sshtools.common.mru.
MRUList.MRUSAXHandler
currentFile
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FileView
currentList
- Variable in class com.sshtools.common.configuration.
SshAPIConfiguration
currentList
- Variable in class com.sshtools.daemon.configuration.
SshAPIConfiguration
currentMount
- Variable in class com.sshtools.daemon.configuration.
PlatformConfiguration.PlatformConfigurationSAXHandler
currentPos
- Variable in class com.sshtools.j2ssh.connection.
ChannelInputStream
currentPos
- Variable in class com.sshtools.j2ssh.subsystem.
SubsystemInputStream
currentProperties
- Variable in class com.sshtools.common.configuration.
SshToolsConnectionProfile
currentRID
- Variable in class com.sshtools.common.automate.
AutomationConfiguration.AutomationConfigurationSAXHandler
currentVal
- Variable in class com.sshtools.common.ui.
NumericTextField.ADocument
Cursor
- Variable in class com.sshtools.daemon.terminal.
Editline
Cursor
- Variable in class com.sshtools.daemon.terminal.
UserInput
cutAction
- Variable in class com.sshtools.common.ui.
XTextField
cutHead(String, String)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns the portion of the given string that stands after the last occurance of the specified separator.
cutTail(String, String)
- Method in class com.sshtools.daemon.util.
StringUtil
Returns the portion of the given string that comes before the last occurance of the specified separator.
cwd
- Variable in class com.sshtools.j2ssh.
ScpClient
cwd
- Variable in class com.sshtools.j2ssh.
SftpClient
CYAN
- Static variable in class com.sshtools.daemon.terminal.
ColorHelper
CYAN
- Static variable in class com.sshtools.daemon.terminal.
TerminalIO
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