edu.harvard.mgh.purcell.gPLINK2.data
Class Project
java.lang.Object
javax.swing.tree.DefaultTreeModel
edu.harvard.mgh.purcell.gCLINE.data.Record
edu.harvard.mgh.purcell.gPLINK2.data.Project
- All Implemented Interfaces:
- KeyWords, java.io.Serializable, javax.swing.tree.TreeModel
public class Project
- extends Record
- See Also:
- Serialized Form
Field Summary |
static java.lang.String |
GPLINK_EXT
|
(package private) static java.lang.String |
HAPLOVIEW_APPEND
|
(package private) static java.lang.String |
HAPLOVIEW_PATH
|
private static org.apache.log4j.Logger |
logger
Optionally log messages. |
(package private) static java.lang.String |
PLINK_PATH
|
(package private) static java.lang.String |
PLINK_PREFIX
|
Fields inherited from class javax.swing.tree.DefaultTreeModel |
asksAllowsChildren, listenerList, root |
Fields inherited from interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords |
BROWSE_KEY, CLINE_KEY, COMMAND_KEY, COMMAND_PREFIX_KEY, FILE_KEY, FOLDER_KEY, GLOBAL_CONFIG, HOME_KEY, HOST_KEY, INFILE_KEY, LOCAL_DIR, LOCAL_FOLDER_KEY, LOCK_FILE, META_FILE, NAME_KEY, OP_KEY, OUTFILE_KEY, P1_KEY, P2_KEY, P3_KEY, P4_KEY, PORT_KEY, REMOTE_CONFIG_FILE, REMOTE_FOLDER_KEY, REMOTE_GLOBAL_CONFIG, TIMESTAMP_KEY, UPDATE_INTERVAL_KEY, USER_EDITOR_KEY, USER_KEY, VS_KEY |
Methods inherited from class edu.harvard.mgh.purcell.gCLINE.data.Record |
addOperation, backupInfo, connect, connect, getAllOp, getAltEditor, getConn, getGlobalNote, getHomeFiles, getHomeFolder, getLocalFolder, getOp, getP1, getP2, getP3, getP4, getRemoteFolder, getSavedBrowse, getStatusExt, getUpdateSec, isRemote, loadData, properClosing, removeOperation, saveConfig, saveInfo, saveInfo, setAltEditor, setConnData, setGlobalFileDisc, setLastProject, setLog, setP1, setP2, setP3, setP4, setUpdateSec, toString |
Methods inherited from class javax.swing.tree.DefaultTreeModel |
addTreeModelListener, asksAllowsChildren, fireTreeNodesChanged, fireTreeNodesInserted, fireTreeNodesRemoved, fireTreeStructureChanged, getChild, getChildCount, getIndexOfChild, getListeners, getPathToRoot, getPathToRoot, getRoot, getTreeModelListeners, insertNodeInto, isLeaf, nodeChanged, nodesChanged, nodeStructureChanged, nodesWereInserted, nodesWereRemoved, reload, reload, removeNodeFromParent, removeTreeModelListener, setAsksAllowsChildren, setRoot, valueForPathChanged |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
logger
private static org.apache.log4j.Logger logger
- Optionally log messages.
PLINK_PATH
static java.lang.String PLINK_PATH
PLINK_PREFIX
static java.lang.String PLINK_PREFIX
HAPLOVIEW_PATH
static java.lang.String HAPLOVIEW_PATH
HAPLOVIEW_APPEND
static java.lang.String HAPLOVIEW_APPEND
GPLINK_EXT
public static java.lang.String GPLINK_EXT
Project
public Project()
Project
public Project(GPLINK f)
Project
public Project(GPLINK f,
java.lang.String localName)
Project
public Project(GPLINK f,
java.lang.String localName,
java.lang.String remoteFileName,
java.lang.String hostname,
java.lang.String username,
java.lang.String portnum,
SshClient c)
setHaploAppend
public void setHaploAppend(java.lang.String append)
setHaploPath
public void setHaploPath(java.lang.String path)
setPlinkPath
public void setPlinkPath(java.lang.String path)
setPlinkPrefix
public void setPlinkPrefix(java.lang.String path)
getHaploAppend
public java.lang.String getHaploAppend()
getHaploPath
public java.lang.String getHaploPath()
getPlinkPath
public java.lang.String getPlinkPath()
getPlinkPrefix
public java.lang.String getPlinkPrefix()
setAutoUpdater
public void setAutoUpdater(AutoUpdater given)
- Description copied from class:
Record
- This is mainly abstract to remind programers to initalize it
- Specified by:
setAutoUpdater
in class Record
saveRemoteConfig
protected void saveRemoteConfig()
- Specified by:
saveRemoteConfig
in class Record
loadRemoteConfig
protected void loadRemoteConfig()
- Specified by:
loadRemoteConfig
in class Record