A B C D E F G H I J K L M N O P Q R S T U V W X Y

B

B - Static variable in class com.sshtools.daemon.terminal.Colorizer
 
b - Static variable in class com.sshtools.daemon.terminal.Colorizer
 
B - Static variable in interface com.sshtools.daemon.terminal.Terminal
 
BACKSPACE - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
backup - Variable in class edu.harvard.mgh.purcell.gPLINK2.PlinkMenuBar
 
backupInfo() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
 
BAD_ENCODING - Static variable in class com.sshtools.j2ssh.util.Base64
 
banner - Variable in class com.sshtools.j2ssh.authentication.SshMsgUserAuthBanner
 
BANNER_ICON - Static variable in class com.sshtools.common.authentication.BannerDialog
 
BANNER_TIMEOUT - Static variable in class com.sshtools.common.ui.SshToolsApplicationClientPanel
 
BannerDialog - Class in com.sshtools.common.authentication
 
BannerDialog(String) - Constructor for class com.sshtools.common.authentication.BannerDialog
Creates a new BannerDialog object.
BannerDialog(Frame, String) - Constructor for class com.sshtools.common.authentication.BannerDialog
Creates a new BannerDialog object.
BannerDialog(Dialog, String) - Constructor for class com.sshtools.common.authentication.BannerDialog
Creates a new BannerDialog object.
bar - Variable in class com.sshtools.common.ui.DataNotificationListener
 
bar - Variable in class com.sshtools.common.ui.SshToolsApplicationApplet.LoadingPanel
 
Base64 - Class in com.sshtools.j2ssh.util
 
Base64() - Constructor for class com.sshtools.j2ssh.util.Base64
 
Base64.InputStream - Class in com.sshtools.j2ssh.util
 
Base64.InputStream(InputStream) - Constructor for class com.sshtools.j2ssh.util.Base64.InputStream
 
Base64.InputStream(InputStream, boolean) - Constructor for class com.sshtools.j2ssh.util.Base64.InputStream
 
Base64.OutputStream - Class in com.sshtools.j2ssh.util
 
Base64.OutputStream(OutputStream) - Constructor for class com.sshtools.j2ssh.util.Base64.OutputStream
 
Base64.OutputStream(OutputStream, boolean) - Constructor for class com.sshtools.j2ssh.util.Base64.OutputStream
 
Base64EncodedFileFormat - Class in com.sshtools.j2ssh.transport.publickey
 
Base64EncodedFileFormat(String, String) - Constructor for class com.sshtools.j2ssh.transport.publickey.Base64EncodedFileFormat
Creates a new Base64EncodedFileFormat object.
Basic - Class in edu.harvard.mgh.purcell.gPLINK2.forms
Create a form that will provide basic summery statistics for a file set.
Basic(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.Basic
Create a form that will allow the user to select which fileset they want to validate and what they want to call the output files.
BasicTerminal - Class in com.sshtools.daemon.terminal
 
BasicTerminal() - Constructor for class com.sshtools.daemon.terminal.BasicTerminal
Creates a new BasicTerminal object.
BCOLOR - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
bcolorTest(String) - Static method in class com.sshtools.daemon.terminal.Colorizer
 
bdButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.StratAnaly
 
bedBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A BrowseButton that selects the bed file
bedBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
bedField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A JTextField that holds the bed file name
bedField - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
begin - Variable in class com.sshtools.j2ssh.net.HttpHeader
 
begin - Variable in class com.sshtools.j2ssh.transport.publickey.Base64EncodedFileFormat
 
BEGIN - Static variable in class com.sshtools.j2ssh.transport.publickey.SECSHPublicKeyFormat
 
BEGIN - Static variable in class com.sshtools.j2ssh.transport.publickey.SshtoolsPrivateKeyFormat
 
beginKeyExchange() - Method in class com.sshtools.j2ssh.transport.TransportProtocolCommon
 
BEL - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
bell() - Method in class com.sshtools.daemon.terminal.TerminalIO
 
bfcolorTest(String) - Static method in class com.sshtools.daemon.terminal.Colorizer
 
bigInt - Variable in class com.sshtools.j2ssh.io.UnsignedInteger64
 
bigIntValue() - Method in class com.sshtools.j2ssh.io.UnsignedInteger64
 
bimBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A BrowseButton thta selects the bim file
bimBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
bimField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A JTextField that holds the bim file name.
bimField - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
binCheck - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A JCheckBox that flags a quick binary input file format (--bfile filename).
bindChannel(BindingChannel) - Method in class com.sshtools.j2ssh.connection.BindingChannel
 
BindingChannel - Class in com.sshtools.j2ssh.connection
 
BindingChannel() - Constructor for class com.sshtools.j2ssh.connection.BindingChannel
 
bindInputStream(InputStream) - Method in class com.sshtools.j2ssh.connection.IOChannel
 
bindMasterInputStream(InputStream) - Method in class com.sshtools.daemon.session.PseudoTerminalWrapper
 
bindMasterOutputStream(OutputStream) - Method in class com.sshtools.daemon.session.PseudoTerminalWrapper
 
bindOutputStream(OutputStream) - Method in class com.sshtools.j2ssh.connection.IOChannel
 
bindSlaveInputStream(InputStream) - Method in class com.sshtools.daemon.session.PseudoTerminalWrapper
 
bindSlaveInputStream(InputStream) - Method in class com.sshtools.daemon.terminal.TerminalIO
 
bindSlaveOutputStream(OutputStream) - Method in class com.sshtools.daemon.session.PseudoTerminalWrapper
 
bindSlaveOutputStream(OutputStream) - Method in class com.sshtools.daemon.terminal.TerminalIO
 
bindSocket(Socket) - Method in class com.sshtools.j2ssh.connection.SocketChannel
 
bindStderrInputStream(InputStream) - Method in class com.sshtools.daemon.session.SessionChannelServer
 
binShort - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A JComboBox that holds the quick binary file roots
binShort - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
binValidDL - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
bits - Variable in class com.sshtools.common.keygen.KeygenPanel
 
bits - Static variable in class com.sshtools.j2ssh.transport.publickey.SshKeyGenerator
 
bitsLabel - Variable in class com.sshtools.common.keygen.KeygenPanel
 
BLACK - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BLACK - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
BLINK - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BLINK - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
BLINK_OFF - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BLINK_OFF - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
blinkingText(String) - Static method in class com.sshtools.daemon.terminal.ColorHelper
 
block() - Method in class com.sshtools.j2ssh.connection.ChannelInputStream
 
block() - Method in class com.sshtools.j2ssh.io.DynamicBuffer
 
blockingThread - Variable in class com.sshtools.j2ssh.connection.ChannelInputStream
 
BLOCKSIZE - Variable in class com.sshtools.j2ssh.SftpClient
 
BlowfishCbc - Class in com.sshtools.j2ssh.transport.cipher
 
BlowfishCbc() - Constructor for class com.sshtools.j2ssh.transport.cipher.BlowfishCbc
Creates a new BlowfishCbc object.
BLUE - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BLUE - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
BOF - Static variable in class com.sshtools.j2ssh.io.IOStreamConnectorState
 
BOLD - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BOLD - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
BOLD_OFF - Static variable in class com.sshtools.daemon.terminal.ColorHelper
 
BOLD_OFF - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
boldcolorizeText(String, String) - Static method in class com.sshtools.daemon.terminal.ColorHelper
 
boldcolorizeText(String, String, String) - Static method in class com.sshtools.daemon.terminal.ColorHelper
 
boldText(String) - Static method in class com.sshtools.daemon.terminal.ColorHelper
 
BooleanIconRenderer - Class in com.sshtools.common.ui
 
BooleanIconRenderer(Icon, Icon) - Constructor for class com.sshtools.common.ui.BooleanIconRenderer
 
borderColor - Variable in class com.sshtools.common.ui.ColorIcon
 
borderLayout1 - Variable in class com.sshtools.common.keygen.KeygenPanel2
 
borderLayout2 - Variable in class com.sshtools.common.keygen.KeygenPanel2
 
boundChannel - Variable in class com.sshtools.j2ssh.connection.BindingChannel
 
boundInputStream - Variable in class com.sshtools.j2ssh.connection.IOChannel
 
boundOutputStream - Variable in class com.sshtools.j2ssh.connection.IOChannel
 
breakWaiting() - Method in class com.sshtools.j2ssh.session.SessionOutputReader
 
breakWaiting() - Method in class com.sshtools.j2ssh.transport.SshMessageStore
 
breakWaiting() - Method in class com.sshtools.j2ssh.util.State
 
browse - Variable in class edu.harvard.mgh.purcell.gPLINK2.PlinkMenuBar
 
BROWSE_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
 
browseInput - Variable in class com.sshtools.common.keygen.KeygenPanel
 
browseInput - Variable in class com.sshtools.common.keygen.KeygenPanel2
 
browseOutput - Variable in class com.sshtools.common.keygen.KeygenPanel
 
browser - Static variable in class com.sshtools.common.util.BrowserLauncher
 
BrowserLauncher - Class in com.sshtools.common.util
 
BrowserLauncher() - Constructor for class com.sshtools.common.util.BrowserLauncher
 
BS - Static variable in interface com.sshtools.daemon.terminal.Terminal
 
BS - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
buf - Variable in class com.sshtools.daemon.terminal.Editline
 
buf - Variable in class com.sshtools.daemon.terminal.UserInput
 
buf - Variable in class com.sshtools.j2ssh.io.DynamicBuffer
The buffer
buffer - Variable in class com.sshtools.daemon.scp.ScpServer
 
buffer - Variable in class com.sshtools.daemon.util.StringScanner
 
buffer - Variable in class com.sshtools.j2ssh.ScpClient.ScpChannel
 
buffer - Variable in class com.sshtools.j2ssh.subsystem.SubsystemChannel
 
buffer - Variable in class com.sshtools.j2ssh.subsystem.SubsystemOutputStream
 
buffer - Variable in class com.sshtools.j2ssh.util.Base64.InputStream
 
buffer - Variable in class com.sshtools.j2ssh.util.Base64.OutputStream
 
BUFFER_SIZE - Static variable in class com.sshtools.daemon.scp.ScpServer
 
buffered - Variable in class com.sshtools.j2ssh.transport.TransportProtocolInputStream
 
bufferLength - Variable in class com.sshtools.j2ssh.util.Base64.InputStream
 
bufferLength - Variable in class com.sshtools.j2ssh.util.Base64.OutputStream
 
BufferOverflowException - Exception in com.sshtools.daemon.terminal
 
BufferOverflowException() - Constructor for exception com.sshtools.daemon.terminal.BufferOverflowException
 
buildAppletComponent() - Method in class com.sshtools.common.ui.SshToolsApplicationApplet
 
buildLayout() - Method in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
Layout the form
buildProfile() - Method in class com.sshtools.common.ui.SshToolsApplicationClientApplet
 
bundel(JToggleButton, JTextField, JButton) - Static method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
bundel(JToggleButton, JTextField) - Static method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
bundel(JToggleButton, JTextField[], Form.BrowseButton[]) - Static method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
bundel(JToggleButton, JTextField[]) - Static method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
bundel(JTextField, JButton) - Static method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
bundle(JLabel, JTextField, Form.BrowseButton) - Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
Create a JPanel that contains a lable, textfield and browse button.
bundle(JLabel, JTextField, Form.BrowseButton) - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
Create a JPanel that contains a lable, textfield and browse button.
buttonPanel - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
buttons - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
buttonsPanel - Variable in class com.sshtools.common.authentication.KBIRequestHandlerDialog
 
BY_APPLICATION - Static variable in class com.sshtools.j2ssh.transport.SshMsgDisconnect
 
ByteArrayReader - Class in com.sshtools.j2ssh.io
 
ByteArrayReader(byte[]) - Constructor for class com.sshtools.j2ssh.io.ByteArrayReader
Creates a new ByteArrayReader object.
ByteArrayWriter - Class in com.sshtools.j2ssh.io
 
ByteArrayWriter() - Constructor for class com.sshtools.j2ssh.io.ByteArrayWriter
Creates a new ByteArrayWriter object.
BYTEMISSING - Static variable in class com.sshtools.daemon.terminal.TerminalIO
 
bytes - Variable in class com.sshtools.j2ssh.io.IOStreamConnector
 
bytesToAdd - Variable in class com.sshtools.j2ssh.connection.SshMsgChannelWindowAdjust
 
bytesTransfered - Variable in class com.sshtools.j2ssh.transport.TransportProtocolInputStream
 
bytesTransfered - Variable in class com.sshtools.j2ssh.transport.TransportProtocolOutputStream
 
byteValue() - Method in class com.sshtools.j2ssh.io.UnsignedInteger32
 

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