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Packages that use GPLINK | |
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edu.harvard.mgh.purcell.gPLINK2 | |
edu.harvard.mgh.purcell.gPLINK2.baseForm | |
edu.harvard.mgh.purcell.gPLINK2.data | |
edu.harvard.mgh.purcell.gPLINK2.forms |
Uses of GPLINK in edu.harvard.mgh.purcell.gPLINK2 |
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Fields in edu.harvard.mgh.purcell.gPLINK2 declared as GPLINK | |
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private GPLINK |
PLINK_Execute.frame
The GPLINK instance we want to store the operation in. |
private GPLINK |
PLINK_Config.frame
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private GPLINK |
PlinkMenuBar.frame
A GPLINK that this menu bar is attached to. |
private GPLINK |
OpenHapDialog.frame
The GPLINK instance this dialog is attached to. |
private GPLINK |
PLINK_Open.parent
The JFrame of the program. |
Constructors in edu.harvard.mgh.purcell.gPLINK2 with parameters of type GPLINK | |
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AddGenericOp(GPLINK mf)
Create a dialog to add an operation that is not automatically processed by our plink import. |
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OpenHapDialog(GPLINK mf,
java.lang.String givenOp,
java.lang.String givenFile)
Create a Dialog to open a Haploview instance. |
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PLINK_Config(GPLINK f)
Create an instance of the configuration dialog. |
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PLINK_Execute(GPLINK givenFrame,
java.lang.String cmd)
Create an instance of this dialog. |
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PLINK_Open(GPLINK p)
Create a dialog that will open up a new project and establish an ssh connection. |
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PLINK_Open(GPLINK f,
java.lang.String local)
Create a dialog that will open a new Project. |
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PLINK_Open(GPLINK f,
java.lang.String local,
java.lang.String givenRemote,
java.lang.String givenHost,
java.lang.String givenUser,
java.lang.String givenPort)
Create a dialog that will open a new Project. |
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PlinkMenuBar(GPLINK givenFrame)
Create an instance of this plink specific menu bar. |
Uses of GPLINK in edu.harvard.mgh.purcell.gPLINK2.baseForm |
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Fields in edu.harvard.mgh.purcell.gPLINK2.baseForm declared as GPLINK | |
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private GPLINK |
InputPane.parent
The GPLINK istance this is attached to. |
GPLINK |
Form.parent
The GPLINK instance that this form is attached to. |
Constructors in edu.harvard.mgh.purcell.gPLINK2.baseForm with parameters of type GPLINK | |
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Form(GPLINK p,
java.lang.String name)
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InputPane(GPLINK p,
Form p2)
Create an input pane for PLINK forms. |
Uses of GPLINK in edu.harvard.mgh.purcell.gPLINK2.data |
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Constructors in edu.harvard.mgh.purcell.gPLINK2.data with parameters of type GPLINK | |
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Project(GPLINK f)
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Project(GPLINK f,
java.lang.String localName)
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Project(GPLINK f,
java.lang.String localName,
java.lang.String remoteFileName,
java.lang.String hostname,
java.lang.String username,
java.lang.String portnum,
SshClient c)
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Uses of GPLINK in edu.harvard.mgh.purcell.gPLINK2.forms |
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Constructors in edu.harvard.mgh.purcell.gPLINK2.forms with parameters of type GPLINK | |
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AlleleAssoc(GPLINK mf)
Create and show an allelic assocation test form. |
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AlleleFreq(GPLINK mf)
creates a new Allele frequency form. |
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Basic(GPLINK p)
Create a form that will allow the user to select which fileset they want to validate and what they want to call the output files. |
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CCAssoc(GPLINK mf)
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Clustering(GPLINK mf)
create a show a new Clustering Form |
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FamAssoc(GPLINK mf)
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GenFileSet(GPLINK mf)
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HapCCAssoc(GPLINK mf)
Create a Haplotype-based C/C test |
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HaploFreq(GPLINK mf)
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HaploPhase(GPLINK mf)
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HapTDTAssoc(GPLINK mf)
Create this form. |
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HardyWinEq(GPLINK mf)
Create a hardy-Weinburg form. |
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HomozRuns(GPLINK mf)
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IBSdist(GPLINK mf)
Form constructer. |
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IndHetz(GPLINK mf)
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MendelErr(GPLINK mf)
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Merge.BinSelectPanel(GPLINK mf)
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Merge.ListSelectPanel(GPLINK mf)
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Merge.TextSelectPanel(GPLINK mf)
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Merge(GPLINK mf)
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Missing(GPLINK mf)
Create a Missing form. |
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NearNeigh(GPLINK mf)
Create the form. |
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QuantTrtInt(GPLINK mf)
Create a form. |
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Regression(GPLINK mf)
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SetAssoc(GPLINK mf)
Create the set based association form. |
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StratAnaly(GPLINK mf)
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Validate(GPLINK p)
Create a form that will allow the user to select which fileset they want to validate and what they want to call the output files. |
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