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F

failIcon - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
FamAssoc - Class in edu.harvard.mgh.purcell.gPLINK2.forms
 
FamAssoc(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.FamAssoc
 
famBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A BrowseButton that selects the fam file.
famBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
famField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
A JTextField that holds the fam file name.
famField - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
familyButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.StratAnaly
 
fFilterButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
fFilterCBox - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
FILE_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
key word for the file node types
fileChoosenOccures(GCFileChooser.FileChoosenEvent) - Method in interface edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser.FileChoosenListener
 
fileDisc - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
fileField - Variable in class edu.harvard.mgh.purcell.gCLINE.RestoreDataDialog
 
fileFilterButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
FileInfo - Class in edu.harvard.mgh.purcell.gCLINE.data
A class that contains file information.
FileInfo(String, String, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
Construct a FileInfo from direct strings.
FileInfo() - Constructor for class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
Create an empty FileInfo where the file name, local and global discription all set to "".
fileInfoIcon - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
fileLabels - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
fileList - Variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
 
filename - Variable in class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
A string that holds the absolute file name.
fileName(String) - Static method in class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
fileName takes a full file name seperated by either \ or / and return the name and extention of that full name
fileName - Variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
The file name that is selected
fileName - Variable in class edu.harvard.mgh.purcell.gCLINE.HierarchyDialog
 
fileNames - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
 
filePanel - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
filesInTransit - Variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
A Vector that stores the files currently being transmited.
FileView - Class in edu.harvard.mgh.purcell.gCLINE.pane
 
FileView() - Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.FileView
 
fileViewer - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.OpView
 
fileViewer - Variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
A panel that views the associated log files.
filter - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
filterBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
filterButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
FilterDialog - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
An extention of JDialog that asks the user to set the filter parameters that are then passed to the calling form.
FilterDialog(Form) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
Constructor
FilterDialog.BrowseButton - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
 
FilterDialog.BrowseButton(JTextField) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog.BrowseButton
 
FilterDialog.BrowseButton(JTextField, String, String) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog.BrowseButton
 
filterFileField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
filterKeyField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
finalLogRoots - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Import
A Vector that holds all non-included roots
flagLocal - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Config.BrowseButton
 
flagShort - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.BinSelectPanel
 
FOLDER_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
key word for the global file notations
FolderView - Class in edu.harvard.mgh.purcell.gCLINE.pane
Create a folder viewer that can generate a JScrollPane.
FolderView(StartFrame, Record) - Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
Create a folder viewer.
FolderView.UpdateJList - Class in edu.harvard.mgh.purcell.gCLINE.pane
Update the folder view to reflect changes in the file/file discriptions.
FolderView.UpdateJList(boolean) - Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.FolderView.UpdateJList
 
folderViewer - Variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
A panel to view the files in your project folder.
force - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView.UpdateJList
 
Form - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
 
Form(GPLINK, String) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
Form.BrowseButton - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
 
Form.BrowseButton(JTextField) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form.BrowseButton
 
Form.BrowseButton(JTextField, String, String) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form.BrowseButton
 
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater
Window that this updater is attached to.
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Lock
 
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Record
A JFrame that holds the main GUI
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.EditFolderDialog
 
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
 
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.OpView
 
frame - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
A StartFrame this menu is attached to
frame - Variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog
The GPLINK instance this dialog is attached to.
frame - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Config
 
frame - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Execute
The GPLINK instance we want to store the operation in.
frame - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Import
The StartFrame that this dialog is attached to.
frame - Variable in class edu.harvard.mgh.purcell.gPLINK2.PlinkMenuBar
A GPLINK that this menu bar is attached to.
freqButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.AlleleFreq
Buttons that allow the user to select the --freq
freqButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Regression
 
fromCBox - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
fromField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
ftButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 

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