|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectjava.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
edu.harvard.mgh.purcell.gPLINK2.forms.Clustering
public class Clustering
Form for the clustering command --cluster
Nested Class Summary |
---|
Nested classes/interfaces inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
---|
Form.BrowseButton |
Nested classes/interfaces inherited from class javax.swing.JDialog |
---|
javax.swing.JDialog.AccessibleJDialog |
Nested classes/interfaces inherited from class java.awt.Dialog |
---|
java.awt.Dialog.AccessibleAWTDialog |
Nested classes/interfaces inherited from class java.awt.Window |
---|
java.awt.Window.AccessibleAWTWindow |
Nested classes/interfaces inherited from class java.awt.Container |
---|
java.awt.Container.AccessibleAWTContainer |
Nested classes/interfaces inherited from class java.awt.Component |
---|
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary | |
---|---|
private javax.swing.JCheckBox |
ccButton
|
private javax.swing.JCheckBox |
ibmButton
|
private javax.swing.JTextField |
ibmText
|
private javax.swing.JCheckBox |
kButton
|
private javax.swing.JTextField |
kText
|
private Form.BrowseButton |
matchBrowse
|
private javax.swing.JCheckBox |
matchButton
|
private Form.BrowseButton |
matchTBrowse
|
private javax.swing.JCheckBox |
matchTButton
|
private javax.swing.JTextField |
matchText
|
private javax.swing.JTextField |
matchTText
|
private javax.swing.JCheckBox |
mcButton
|
private javax.swing.JTextField |
mcc1Text
|
private javax.swing.JTextField |
mcc2Text
|
private javax.swing.JCheckBox |
mccButton
|
private javax.swing.JTextField |
mcText
|
static java.lang.String |
name
|
(package private) static java.lang.Double |
PCC_DEFAULT
|
(package private) static java.lang.Double |
PIBS_G_DEFAULT
|
private javax.swing.JTextField |
pibsGText
|
private javax.swing.JCheckBox |
ppcButton
|
private javax.swing.JTextField |
ppcText
|
private Form.BrowseButton |
qmatchBrowse
|
private javax.swing.JCheckBox |
qmatchButton
|
private Form.BrowseButton |
qmatchQTBrowse
|
private javax.swing.JTextField |
qmatchText
|
private javax.swing.JTextField |
qtText
|
private Form.BrowseButton |
readGBrowse
|
private javax.swing.JTextField |
readGText
|
Fields inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
---|
filterButton, input, output, parent, thresholdButton, validateBodyAL, validateBodyDL, validBody |
Fields inherited from class javax.swing.JDialog |
---|
accessibleContext, rootPane, rootPaneCheckingEnabled |
Fields inherited from class java.awt.Component |
---|
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface javax.swing.WindowConstants |
---|
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE |
Fields inherited from interface java.awt.image.ImageObserver |
---|
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
---|---|
Clustering(GPLINK mf)
create a show a new Clustering Form |
Method Summary | |
---|---|
protected javax.swing.JPanel |
createBody()
create the body of the form |
protected void |
isBodyValid()
Check to see if the body is correctly filled out. |
protected java.lang.String |
processBody()
process the body of the form to generate the plink command |
Methods inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
---|
addFilter, addThreshold, bundel, bundel, bundel, bundel, bundel, closeButtons, okForm, openButtons, resetFilter, resetThreshold |
Methods inherited from class javax.swing.JDialog |
---|
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update |
Methods inherited from class java.awt.Dialog |
---|
addNotify, getTitle, hide, isModal, isResizable, isUndecorated, setModal, setResizable, setTitle, setUndecorated, show |
Methods inherited from class java.awt.Window |
---|
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, finalize, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, toBack, toFront |
Methods inherited from class java.awt.Container |
---|
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
---|
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
---|
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
---|
public static java.lang.String name
private javax.swing.JCheckBox ppcButton
private javax.swing.JCheckBox ccButton
private javax.swing.JCheckBox kButton
private javax.swing.JCheckBox ibmButton
private javax.swing.JCheckBox matchButton
private javax.swing.JCheckBox matchTButton
private javax.swing.JCheckBox qmatchButton
private javax.swing.JCheckBox mcButton
private javax.swing.JCheckBox mccButton
private javax.swing.JTextField readGText
private javax.swing.JTextField ppcText
private javax.swing.JTextField pibsGText
private javax.swing.JTextField mcText
private javax.swing.JTextField mcc1Text
private javax.swing.JTextField mcc2Text
private javax.swing.JTextField kText
private javax.swing.JTextField ibmText
private javax.swing.JTextField matchText
private javax.swing.JTextField matchTText
private javax.swing.JTextField qmatchText
private javax.swing.JTextField qtText
private Form.BrowseButton readGBrowse
private Form.BrowseButton matchBrowse
private Form.BrowseButton matchTBrowse
private Form.BrowseButton qmatchBrowse
private Form.BrowseButton qmatchQTBrowse
static java.lang.Double PIBS_G_DEFAULT
static java.lang.Double PCC_DEFAULT
Constructor Detail |
---|
public Clustering(GPLINK mf)
mf
- MainFrame this form is attached toMethod Detail |
---|
protected javax.swing.JPanel createBody()
createBody
in class Form
protected void isBodyValid()
Form
isBodyValid
in class Form
protected java.lang.String processBody()
processBody
in class Form
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |