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ibmButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Clustering
 
ibmText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Clustering
 
IBSdist - Class in edu.harvard.mgh.purcell.gPLINK2.forms
Create an ibs distance matrix form.
IBSdist(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.IBSdist
Form constructer.
ibsDistButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.IBSdist
flag the creation of a ibs distatnce matrix
ignore - Variable in class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
 
IndHetz - Class in edu.harvard.mgh.purcell.gPLINK2.forms
 
IndHetz(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.IndHetz
 
infile - Variable in class edu.harvard.mgh.purcell.gCLINE.LinkNewFileDialog
A JRadioButton that flags this as an input file.
INFILE_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
key word for the input files group
infileLabel - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
infiles - Variable in class edu.harvard.mgh.purcell.gCLINE.DeleteOpDialog
A JCheckBox array that holds the deletion options for the selected input files.
infiles - Variable in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
A list that holds all the current inputfiles
infileText - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
infoButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog
A JButton that triggers the info file browse.
infoFile - Variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog
A JTextField that holds the full info file path.
infoSuffex - Static variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog
A String array that holds all the suffix's that flag a info file.
initalize(FileFilter) - Method in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
 
initalize() - Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
initalize() - Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
Initalize all the variables and fields.
initalize() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
 
inlistmodel - Variable in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
A DefaultListModel that holds the data for the input list.
input - Variable in class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
A DefaultMutableTreeName that holds the input files.
input - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
input - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
The InputPane for this form.
InputPane - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
A Tabbed Pane subclass that contains the binary, standard and alternative phenotype options.
InputPane(GPLINK, Form) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
Create an input pane for PLINK forms.
intialize() - Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
Intialize all the private class variables we all so add any ItemListeners here.
inTransit(String) - Method in class edu.harvard.mgh.purcell.gCLINE.StartFrame
Check to see if the file is in transit.
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
Check to see if the body is correctly filled out.
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.AlleleAssoc
Return true.
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.AlleleFreq
check to see if the commands selected are valid.
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Basic
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.CCAssoc
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Clustering
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.FamAssoc
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.GenFileSet
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HardyWinEq
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.IBSdist
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.IndHetz
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.MendelErr
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Missing
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.NearNeigh
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.QuantTrtInt
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Regression
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.SetAssoc
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.StratAnaly
 
isBodyValid() - Method in class edu.harvard.mgh.purcell.gPLINK2.forms.Validate
 
isBrowseOnly - Variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
 
isCompleteOp(Object) - Method in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
isFailedOp(Object) - Method in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
isFile(Object) - Method in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
isNew - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Record
 
isRemote() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
Is this record tied to a remote directory?
isRunningOp(Object) - Method in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater.MyRenderer
 
isvalid() - Method in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
Check to see if the form is valid

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