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ibmButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
ibmText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
IBSdist
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
Create an ibs distance matrix form.
IBSdist(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
IBSdist
Form constructer.
ibsDistButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
IBSdist
flag the creation of a ibs distatnce matrix
ignore
- Variable in class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
IndHetz
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
IndHetz(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
IndHetz
infile
- Variable in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
A JRadioButton that flags this as an input file.
INFILE_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
key word for the input files group
infileLabel
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
infiles
- Variable in class edu.harvard.mgh.purcell.gCLINE.
DeleteOpDialog
A JCheckBox array that holds the deletion options for the selected input files.
infiles
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
A list that holds all the current inputfiles
infileText
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
infoButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
A JButton that triggers the info file browse.
infoFile
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
A JTextField that holds the full info file path.
infoSuffex
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
A String array that holds all the suffix's that flag a info file.
initalize(FileFilter)
- Method in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
initalize()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
initalize()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Initalize all the variables and fields.
initalize()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
inlistmodel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
A DefaultListModel that holds the data for the input list.
input
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
OperationInfo
A DefaultMutableTreeName that holds the input files.
input
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
input
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
The InputPane for this form.
InputPane
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
A Tabbed Pane subclass that contains the binary, standard and alternative phenotype options.
InputPane(GPLINK, Form)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Create an input pane for PLINK forms.
intialize()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Intialize all the private class variables we all so add any ItemListeners here.
inTransit(String)
- Method in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
Check to see if the file is in transit.
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
Check to see if the body is correctly filled out.
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleAssoc
Return true.
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleFreq
check to see if the commands selected are valid.
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Basic
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
CCAssoc
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Clustering
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
GenFileSet
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HardyWinEq
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
IBSdist
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
IndHetz
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
MendelErr
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Missing
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
NearNeigh
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
QuantTrtInt
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Regression
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
SetAssoc
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
isBodyValid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.forms.
Validate
isBrowseOnly
- Variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
isCompleteOp(Object)
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
isFailedOp(Object)
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
isFile(Object)
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
isNew
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Record
isRemote()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
Is this record tied to a remote directory?
isRunningOp(Object)
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
isvalid()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
Check to see if the form is valid
Overview
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