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F
failIcon
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
FamAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
FamAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
famBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
A BrowseButton that selects the fam file.
famBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.BinSelectPanel
famField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
A JTextField that holds the fam file name.
famField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.BinSelectPanel
familyButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
fFilterButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
fFilterCBox
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
FILE_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
key word for the file node types
fileChoosenOccures(GCFileChooser.FileChoosenEvent)
- Method in interface edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser.FileChoosenListener
fileDisc
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
fileField
- Variable in class edu.harvard.mgh.purcell.gCLINE.
RestoreDataDialog
fileFilterButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
FileInfo
- Class in
edu.harvard.mgh.purcell.gCLINE.data
A class that contains file information.
FileInfo(String, String, String)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
Construct a FileInfo from direct strings.
FileInfo()
- Constructor for class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
Create an empty FileInfo where the file name, local and global discription all set to "".
fileInfoIcon
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater.MyRenderer
fileLabels
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
fileList
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
filename
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
A string that holds the absolute file name.
fileName(String)
- Static method in class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
fileName takes a full file name seperated by either \ or / and return the name and extention of that full name
fileName
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
The file name that is selected
fileName
- Variable in class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
fileNames
- Variable in class edu.harvard.mgh.purcell.gCLINE.
PopUpMenu
filePanel
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
filesInTransit
- Variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
A Vector that stores the files currently being transmited.
FileView
- Class in
edu.harvard.mgh.purcell.gCLINE.pane
FileView()
- Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.
FileView
fileViewer
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
fileViewer
- Variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
A panel that views the associated log files.
filter
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
filterBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
filterButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
FilterDialog
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
An extention of JDialog that asks the user to set the filter parameters that are then passed to the calling form.
FilterDialog(Form)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
Constructor
FilterDialog.BrowseButton
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
FilterDialog.BrowseButton(JTextField)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog.BrowseButton
FilterDialog.BrowseButton(JTextField, String, String)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog.BrowseButton
filterFileField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
filterKeyField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
finalLogRoots
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Import
A Vector that holds all non-included roots
flagLocal
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config.BrowseButton
flagShort
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.BinSelectPanel
FOLDER_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
key word for the global file notations
FolderView
- Class in
edu.harvard.mgh.purcell.gCLINE.pane
Create a folder viewer that can generate a JScrollPane.
FolderView(StartFrame, Record)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
Create a folder viewer.
FolderView.UpdateJList
- Class in
edu.harvard.mgh.purcell.gCLINE.pane
Update the folder view to reflect changes in the file/file discriptions.
FolderView.UpdateJList(boolean)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView.UpdateJList
folderViewer
- Variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
A panel to view the files in your project folder.
force
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView.UpdateJList
Form
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
Form(GPLINK, String)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
Form.BrowseButton
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
Form.BrowseButton(JTextField)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form.BrowseButton
Form.BrowseButton(JTextField, String, String)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form.BrowseButton
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater
Window that this updater is attached to.
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Record
A JFrame that holds the main GUI
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditFolderDialog
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
frame
- Variable in class edu.harvard.mgh.purcell.gCLINE.
PopUpMenu
A StartFrame this menu is attached to
frame
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
The GPLINK instance this dialog is attached to.
frame
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
frame
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Execute
The GPLINK instance we want to store the operation in.
frame
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Import
The StartFrame that this dialog is attached to.
frame
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
A GPLINK that this menu bar is attached to.
freqButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
AlleleFreq
Buttons that allow the user to select the --freq
freqButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Regression
fromCBox
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
fromField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
ftButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
Overview
Package
Class
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