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HapCCAssoc - Class in edu.harvard.mgh.purcell.gPLINK2.forms
A form that allows the user to create a Haplotype-based C/C test plink command line
HapCCAssoc(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
Create a Haplotype-based C/C test
hapListBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
hapListBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
hapListBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
hapListBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
hapListButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
hapListButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
hapListButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
hapListButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
hapListText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
hapListText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
hapListText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
hapListText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
haploAppend - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Config
A JTextField for the haploview append command.
HaploFreq - Class in edu.harvard.mgh.purcell.gPLINK2.forms
 
HaploFreq(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
haploPath - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Config
A JTextField for the haploview jar path.
HaploPhase - Class in edu.harvard.mgh.purcell.gPLINK2.forms
 
HaploPhase(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
HAPLOVIEW_APPEND - Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.Project
 
HAPLOVIEW_PATH - Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.Project
 
HapTDTAssoc - Class in edu.harvard.mgh.purcell.gPLINK2.forms
A haplotype, family based association test form.
HapTDTAssoc(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
Create this form.
hapWindowButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
hapWindowButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
hapWindowButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
hapWindowButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
hapWindowText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapCCAssoc
 
hapWindowText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploFreq
 
hapWindowText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HaploPhase
 
hapWindowText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HapTDTAssoc
 
HardyWinEq - Class in edu.harvard.mgh.purcell.gPLINK2.forms
Create a form that checks the hardy weinburg equalibrium of a given data set.
HardyWinEq(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HardyWinEq
Create a hardy-Weinburg form.
hasLock() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Lock
 
HierarchyDialog - Class in edu.harvard.mgh.purcell.gCLINE
 
HierarchyDialog(String, StartFrame, Record, String, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.HierarchyDialog
Main constructor.
HierarchyDialog.MyRenderer - Class in edu.harvard.mgh.purcell.gCLINE
 
HierarchyDialog.MyRenderer() - Constructor for class edu.harvard.mgh.purcell.gCLINE.HierarchyDialog.MyRenderer
 
HOME_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
project file key
homGroupButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homHetButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homHetText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homKBButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homKBText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homMatchButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homMatchText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homogButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.StratAnaly
 
HomozRuns - Class in edu.harvard.mgh.purcell.gPLINK2.forms
 
HomozRuns(GPLINK) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homSNPButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homSNPText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
homVerboseButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
 
host - Variable in class edu.harvard.mgh.purcell.gCLINE.tester.Open
 
host - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Open
A JTextField that keeps the host name.
HOST_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
A string that states the remote host key.
hwe - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
Fields for user entered thresholds
hweButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
Buttons to flag user specified thresholds

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