Class Summary |
AlleleAssoc |
Creates a form that does a basic --assoc test |
AlleleFreq |
Create a form that allows the user to test for Allele
frequency. |
Basic |
Create a form that will provide basic summery
statistics for a file set. |
CCAssoc |
|
Clustering |
Form for the clustering command --cluster |
FamAssoc |
|
GenFileSet |
Reformat a fileset. |
HapCCAssoc |
A form that allows the user to create a Haplotype-based C/C test plink
command line |
HaploFreq |
|
HaploPhase |
|
HapTDTAssoc |
A haplotype, family based association test form. |
HardyWinEq |
Create a form that checks the hardy weinburg
equalibrium of a given data set. |
HomozRuns |
|
IBSdist |
Create an ibs distance matrix form. |
IndHetz |
|
MendelErr |
|
Merge |
Merge two file sets. |
Missing |
Create a Form to test for missing data using PLINK "--missing". |
NearNeigh |
Allow the user to create a nearest neighbour command. |
QuantTrtInt |
A Quantitative trait interaction form. |
Regression |
A linear/logistic regression form. |
SetAssoc |
A Set based association file. |
StratAnaly |
|
Validate |
Create a form that will provide basic summery
statistics for a file set. |