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java.lang.Objectjava.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
edu.harvard.mgh.purcell.gPLINK2.forms.CCAssoc
public class CCAssoc
Nested Class Summary |
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Nested classes/interfaces inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
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Form.BrowseButton |
Nested classes/interfaces inherited from class javax.swing.JDialog |
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javax.swing.JDialog.AccessibleJDialog |
Nested classes/interfaces inherited from class java.awt.Dialog |
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java.awt.Dialog.AccessibleAWTDialog |
Nested classes/interfaces inherited from class java.awt.Window |
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java.awt.Window.AccessibleAWTWindow |
Nested classes/interfaces inherited from class java.awt.Container |
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java.awt.Container.AccessibleAWTContainer |
Nested classes/interfaces inherited from class java.awt.Component |
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java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary | |
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(package private) javax.swing.JCheckBox |
adjustButton
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private static java.lang.Integer |
CELL_DEFAULT
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(package private) javax.swing.JCheckBox |
cellButton
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private static java.lang.Double |
CI_DEFAULT
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(package private) javax.swing.JCheckBox |
ciButton
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(package private) javax.swing.JTextField |
ciText
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(package private) javax.swing.JTextField |
cText
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(package private) javax.swing.JRadioButton |
mBestButton
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(package private) javax.swing.JRadioButton |
mDomButton
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(package private) javax.swing.JRadioButton |
mGenButton
|
private static java.lang.Integer |
MPERM_DEFAULT
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(package private) javax.swing.JRadioButton |
mperm2Button
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(package private) javax.swing.JTextField |
mperm2Text
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(package private) javax.swing.JRadioButton |
mRecButton
|
(package private) javax.swing.JRadioButton |
mTrendButton
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static java.lang.String |
name
|
(package private) javax.swing.JRadioButton |
perm2Button
|
Fields inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
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filterButton, input, output, parent, thresholdButton, validateBodyAL, validateBodyDL, validBody |
Fields inherited from class javax.swing.JDialog |
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accessibleContext, rootPane, rootPaneCheckingEnabled |
Fields inherited from class java.awt.Component |
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BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface javax.swing.WindowConstants |
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DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE |
Fields inherited from interface java.awt.image.ImageObserver |
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ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
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CCAssoc(GPLINK mf)
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Method Summary | |
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protected javax.swing.JPanel |
createBody()
Create the body for this form. |
protected void |
isBodyValid()
Check to see if the body is correctly filled out. |
protected java.lang.String |
processBody()
Create the commandline based on the fields of this form. |
Methods inherited from class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form |
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addFilter, addThreshold, bundel, bundel, bundel, bundel, bundel, closeButtons, okForm, openButtons, resetFilter, resetThreshold |
Methods inherited from class javax.swing.JDialog |
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addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update |
Methods inherited from class java.awt.Dialog |
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addNotify, getTitle, hide, isModal, isResizable, isUndecorated, setModal, setResizable, setTitle, setUndecorated, show |
Methods inherited from class java.awt.Window |
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addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, finalize, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, toBack, toFront |
Methods inherited from class java.awt.Container |
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add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
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action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
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clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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public static java.lang.String name
javax.swing.JCheckBox ciButton
javax.swing.JCheckBox adjustButton
javax.swing.JCheckBox cellButton
javax.swing.JRadioButton mperm2Button
javax.swing.JRadioButton perm2Button
javax.swing.JRadioButton mGenButton
javax.swing.JRadioButton mTrendButton
javax.swing.JRadioButton mDomButton
javax.swing.JRadioButton mRecButton
javax.swing.JRadioButton mBestButton
javax.swing.JTextField ciText
javax.swing.JTextField cText
javax.swing.JTextField mperm2Text
private static java.lang.Double CI_DEFAULT
private static java.lang.Integer MPERM_DEFAULT
private static java.lang.Integer CELL_DEFAULT
Constructor Detail |
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public CCAssoc(GPLINK mf)
Method Detail |
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protected javax.swing.JPanel createBody()
Form
createBody
in class Form
protected void isBodyValid()
Form
isBodyValid
in class Form
protected java.lang.String processBody()
Form
processBody
in class Form
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