A B C D E F G H I K L M N O P Q R S T U V W

L

launchOldProject(String) - Method in class edu.harvard.mgh.purcell.gPLINK2.PlinkMenuBar
Open up a project with the appropreate remote configurations.
launchPopup - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
Listen for a tree selection that will activate the popup menu to manipulate the project annotation and open in/out files.
layoutPanels() - Method in class edu.harvard.mgh.purcell.gCLINE.StartFrame
Layout the panels; fileView, FolderView, OpView and add the file transfure status note.
layoutPanels(TestFrame.myProject) - Method in class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame
 
layoutPanels() - Method in class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame
 
layoutPanels(Project) - Method in class edu.harvard.mgh.purcell.gPLINK2.GPLINK
Re-set the panels of based on given project.
layoutPanels() - Method in class edu.harvard.mgh.purcell.gPLINK2.GPLINK
 
lengthOpt1 - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
lengthOpt2 - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
LinkNewFileDialog - Class in edu.harvard.mgh.purcell.gCLINE
A JDailgo that allow the user to link a file to an operation.
LinkNewFileDialog(StartFrame, Record, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.LinkNewFileDialog
Create a Dialog that will link a file to a given operation.
LinkNewFileDialog.BrowseButton - Class in edu.harvard.mgh.purcell.gCLINE
 
LinkNewFileDialog.BrowseButton(JTextField) - Constructor for class edu.harvard.mgh.purcell.gCLINE.LinkNewFileDialog.BrowseButton
 
list - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
A DefaultList Model that we can modify dynamically if there is something to change
listBrowse - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.ListSelectPanel
 
listField - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.ListSelectPanel
 
loadData(File, String, boolean) - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
Load the info document from xml file, otherwise set as default.
loadGlobalConfig() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
Load the config values from a Properties formated file.
loadRemoteConfig() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
 
loadRemoteConfig() - Method in class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myProject
 
loadRemoteConfig() - Method in class edu.harvard.mgh.purcell.gPLINK2.data.Project
 
LOCAL_DIR - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
Holds the location of the users current directory.
LOCAL_FOLDER_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
local project file
LOCAL_UPDATE_INTERVAL_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
local update interval key
localChooser - Variable in class edu.harvard.mgh.purcell.gCLINE.general.Configure
 
localChooser - Variable in class edu.harvard.mgh.purcell.gCLINE.RestoreDataDialog
 
localChooser - Variable in class edu.harvard.mgh.purcell.gCLINE.tester.Open
Our file choosing class for the local directory.
localChooser - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Open
Our file choosing class for the local directory.
localConfig - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Record
localConfig is a Properties that holds the local project configuration data.
localDisc - Variable in class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
A string that holds an operation specific discription of this file.
localFilenames - Variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
An array of the full file names of selected local files
localFiles - Variable in class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
 
localFolder - Variable in class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
 
localPicker - Variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
A dialog that allows hte user to select a local file.
localProject - Variable in class edu.harvard.mgh.purcell.gCLINE.tester.Open
Let the user look at the local project directory.
localProject - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Open
Let the user look at the local project directory.
Lock - Class in edu.harvard.mgh.purcell.gCLINE.data
Deal with the locking and unlocking of a folder.
Lock(StartFrame, Record) - Constructor for class edu.harvard.mgh.purcell.gCLINE.data.Lock
Create a lock from a string representing the local file and set the new key.
LOCK_FILE - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
file that holds the project lock
lockFile - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Lock
The lock file.
lockFile() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Lock
Write the key to the lock file.
logger - Variable in class edu.harvard.mgh.purcell.gCLINE.data.AutoUpdater
A logger for this clas
logger - Variable in class edu.harvard.mgh.purcell.gCLINE.data.Lock
A logger for this clas
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.data.Record
logger is a Logger that optionally log messages for debugging/troubleshooting.
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.data.RunCommand
Define a static logger variable
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.general.GCFileChooser
Log comments and errors
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.HierarchyDialog
Define a static logger variable so that it references the
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.FileView
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
 
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.OpView
 
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.PopUpMenu
Define a static logger variable so that it references the
logger - Variable in class edu.harvard.mgh.purcell.gCLINE.RestoreDataDialog
A logger for this class
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.StartFrame
Optionally log messages.
logger - Variable in class edu.harvard.mgh.purcell.gCLINE.tester.Open
A logger for this clas
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
Define a static logger variable so that it references the
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.InputPane
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.OutputPane
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.Project
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.HomozRuns
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.GPLINK
Optionally log messages.
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog
Log comments and errors
logger - Static variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Execute
Optionally log messages.
logger - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Import
A logger for this class
logger - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Open
A logger for this class
logger - Variable in class edu.harvard.mgh.purcell.gPLINK2.PlinkMenuBar
A logger for this class

A B C D E F G H I K L M N O P Q R S T U V W