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HapCCAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
A form that allows the user to create a Haplotype-based C/C test plink command line
HapCCAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
Create a Haplotype-based C/C test
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapListText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
haploAppend
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
A JTextField for the haploview append command.
HaploFreq
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HaploFreq(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
haploPath
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config
A JTextField for the haploview jar path.
HaploPhase
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HaploPhase(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
HAPLOVIEW_APPEND
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
HAPLOVIEW_PATH
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
HapTDTAssoc
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
A haplotype, family based association test form.
HapTDTAssoc(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
Create this form.
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapWindowButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapCCAssoc
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploFreq
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HaploPhase
hapWindowText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HapTDTAssoc
HardyWinEq
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
Create a form that checks the hardy weinburg equalibrium of a given data set.
HardyWinEq(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HardyWinEq
Create a hardy-Weinburg form.
hasLock()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
HierarchyDialog
- Class in
edu.harvard.mgh.purcell.gCLINE
HierarchyDialog(String, StartFrame, Record, String, String)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
Main constructor.
HierarchyDialog.MyRenderer
- Class in
edu.harvard.mgh.purcell.gCLINE
HierarchyDialog.MyRenderer()
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog.MyRenderer
HOME_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
project file key
homGroupButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homHetButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homHetText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homKBButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homKBText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homMatchButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homMatchText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homogButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
StratAnaly
HomozRuns
- Class in
edu.harvard.mgh.purcell.gPLINK2.forms
HomozRuns(GPLINK)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homSNPButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homSNPText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
homVerboseButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
host
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
host
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
A JTextField that keeps the host name.
HOST_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
A string that states the remote host key.
hwe
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Fields for user entered thresholds
hweButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Buttons to flag user specified thresholds
Overview
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