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T

t2Button - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.SetAssoc
 
target - Variable in class edu.harvard.mgh.purcell.gCLINE.LinkNewFileDialog.BrowseButton
 
target - Variable in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp.BrowseButton
 
target - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog.BrowseButton
 
target - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form.BrowseButton
 
target - Variable in class edu.harvard.mgh.purcell.gPLINK2.PLINK_Config.BrowseButton
A JTextField where we want the file stored.
targetBin - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
 
targetText - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
 
targetTXT - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge
 
tdtButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.FamAssoc
 
tempIn - Variable in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
The JTextField that holds an input file.
tempOut - Variable in class edu.harvard.mgh.purcell.gPLINK2.AddGenericOp
The JTextField that holds the new output file.
testByGeno - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Missing
A JRadioButton to flag (--test-mishap) with optional (--mishap-window)
testByPheno - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Missing
A JRadioButton to flag the "--test-missing" option that looks for missing phenotype
TestFrame - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame() - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame
 
TestFrame.myFolderView - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame.myFolderView(Record) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myFolderView
 
TestFrame.myOpView - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame.myOpView(Record, FileView) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myOpView
 
TestFrame.myPopUpMenu - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame.myPopUpMenu(StartFrame, Record, String[], String[]) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myPopUpMenu
 
TestFrame.myProject - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame.myProject(TestFrame) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myProject
 
TestFrame.myProject(TestFrame, String, String, String, String, String, SshClient) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myProject
 
TestFrame.myProject(TestFrame, String) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.myProject
 
TestFrame.StartFrameConfig - Class in edu.harvard.mgh.purcell.gCLINE.tester
 
TestFrame.StartFrameConfig(Record) - Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.TestFrame.StartFrameConfig
 
text - Variable in class edu.harvard.mgh.purcell.gPLINK2.OpenHapDialog.myActionListener
A JTextField that holds the file name and is the target of the GCFileChooser
textdisplay - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.FileView
 
textValidDL - Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.Merge.TextSelectPanel
 
threshold - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
thresholdButton - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.Form
 
ThresholdDialog - Class in edu.harvard.mgh.purcell.gPLINK2.baseForm
An extention of JDialog to modify thresholds in the plink command.
ThresholdDialog(Form) - Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
Create a dialog to allow the user to specify threshold values
time - Variable in class edu.harvard.mgh.purcell.gCLINE.EditOpDialog
 
timestamp - Variable in class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
 
TIMESTAMP_KEY - Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.KeyWords
 
toCBox - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
toField - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
toJScrollPane() - Method in class edu.harvard.mgh.purcell.gCLINE.pane.FolderView
Create a JScrollPane that holds the list.
toJScrollPane() - Method in class edu.harvard.mgh.purcell.gCLINE.pane.OpView
Wrap this view up in a JScrollPane so that we can add it to a frame.
toLabel - Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.FilterDialog
 
toString() - Method in class edu.harvard.mgh.purcell.gCLINE.data.FileInfo
Show the file name as the string representation of this class.
toString() - Method in class edu.harvard.mgh.purcell.gCLINE.data.OperationInfo
Get the name and discription of this operation.
toString() - Method in class edu.harvard.mgh.purcell.gCLINE.data.Record
Print the home folder of the record.
TransfureFiles - Class in edu.harvard.mgh.purcell.gCLINE
 
TransfureFiles(Record, boolean, File, String[]) - Constructor for class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
 
TransfureFiles(Record, boolean, String, File[]) - Constructor for class edu.harvard.mgh.purcell.gCLINE.TransfureFiles
 
treeEvents - Variable in class edu.harvard.mgh.purcell.gCLINE.pane.OpView
Listen for a tree selection that will activate the popup menu to manipulate the project annotation and open in/out files.

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