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t2Button
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
SetAssoc
target
- Variable in class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog.BrowseButton
target
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp.BrowseButton
target
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog.BrowseButton
target
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form.BrowseButton
target
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Config.BrowseButton
A JTextField where we want the file stored.
targetBin
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
targetText
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
targetTXT
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge
tdtButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
FamAssoc
tempIn
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
The JTextField that holds an input file.
tempOut
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
AddGenericOp
The JTextField that holds the new output file.
testByGeno
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Missing
A JRadioButton to flag (--test-mishap) with optional (--mishap-window)
testByPheno
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Missing
A JRadioButton to flag the "--test-missing" option that looks for missing phenotype
TestFrame
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame()
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame
TestFrame.myFolderView
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame.myFolderView(Record)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myFolderView
TestFrame.myOpView
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame.myOpView(Record, FileView)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myOpView
TestFrame.myPopUpMenu
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame.myPopUpMenu(StartFrame, Record, String[], String[])
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myPopUpMenu
TestFrame.myProject
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame.myProject(TestFrame)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myProject
TestFrame.myProject(TestFrame, String, String, String, String, String, SshClient)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myProject
TestFrame.myProject(TestFrame, String)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myProject
TestFrame.StartFrameConfig
- Class in
edu.harvard.mgh.purcell.gCLINE.tester
TestFrame.StartFrameConfig(Record)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.StartFrameConfig
text
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog.myActionListener
A JTextField that holds the file name and is the target of the GCFileChooser
textdisplay
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FileView
textValidDL
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.TextSelectPanel
threshold
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
thresholdButton
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
ThresholdDialog
- Class in
edu.harvard.mgh.purcell.gPLINK2.baseForm
An extention of JDialog to modify thresholds in the plink command.
ThresholdDialog(Form)
- Constructor for class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Create a dialog to allow the user to specify threshold values
time
- Variable in class edu.harvard.mgh.purcell.gCLINE.
EditOpDialog
timestamp
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
OperationInfo
TIMESTAMP_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
toCBox
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
toField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
toJScrollPane()
- Method in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
Create a JScrollPane that holds the list.
toJScrollPane()
- Method in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
Wrap this view up in a JScrollPane so that we can add it to a frame.
toLabel
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
toString()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
Show the file name as the string representation of this class.
toString()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
OperationInfo
Get the name and discription of this operation.
toString()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
Print the home folder of the record.
TransfureFiles
- Class in
edu.harvard.mgh.purcell.gCLINE
TransfureFiles(Record, boolean, File, String[])
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
TransfureFiles(Record, boolean, String, File[])
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
treeEvents
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
Listen for a tree selection that will activate the popup menu to manipulate the project annotation and open in/out files.
Overview
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All Classes
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