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SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectjava.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
edu.harvard.mgh.purcell.gPLINK2.baseForm.ThresholdDialog
public class ThresholdDialog
An extention of JDialog to modify thresholds in the plink command.
Nested Class Summary |
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Nested classes/interfaces inherited from class javax.swing.JDialog |
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javax.swing.JDialog.AccessibleJDialog |
Nested classes/interfaces inherited from class java.awt.Dialog |
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java.awt.Dialog.AccessibleAWTDialog |
Nested classes/interfaces inherited from class java.awt.Window |
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java.awt.Window.AccessibleAWTWindow |
Nested classes/interfaces inherited from class java.awt.Container |
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java.awt.Container.AccessibleAWTContainer |
Nested classes/interfaces inherited from class java.awt.Component |
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java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary | |
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(package private) java.awt.event.ActionListener |
cancel
Cancel the dailog and throw it away without changing things |
private javax.swing.JButton |
cancelButton
Buttons to operate this dialog |
private javax.swing.JTextField |
geno
Fields for user entered thresholds |
private static java.lang.Double |
GENO_DEFAULT
The default maximum per-SNP missing |
private javax.swing.JCheckBox |
genoButton
Buttons to flag user specified thresholds |
private javax.swing.JTextField |
hwe
Fields for user entered thresholds |
private javax.swing.JCheckBox |
hweButton
Buttons to flag user specified thresholds |
private static org.apache.log4j.Logger |
logger
Optionally log messages. |
private javax.swing.JTextField |
maf
Fields for user entered thresholds |
private static java.lang.Double |
MAF_DEFAULT
The default minor allelic frequency |
private javax.swing.JCheckBox |
mafButton
Buttons to flag user specified thresholds |
private javax.swing.JTextField |
maxMaf
Fields for user entered thresholds |
private static java.lang.Double |
MAXMAF_DEFAULT
The default maximum minor allelic frequency |
private javax.swing.JCheckBox |
maxMafButton
Buttons to flag user specified thresholds |
private javax.swing.JTextField |
mendell
Fields for user entered thresholds |
private javax.swing.JTextField |
mendell2
Fields for user entered thresholds |
private javax.swing.JCheckBox |
mendellButton
Buttons to flag user specified thresholds |
private javax.swing.JTextField |
mind
Fields for user entered thresholds |
private static java.lang.Double |
MIND_DEFAULT
The default maximum per-person missing |
private javax.swing.JCheckBox |
mindButton
Buttons to flag user specified thresholds |
private javax.swing.JButton |
okButton
Buttons to operate this dialog |
private Form |
parent
The form that this dialog is attached to |
(package private) java.awt.event.ActionListener |
process
Process the dialog to command line. |
private java.awt.event.WindowListener |
properClosing
|
(package private) java.awt.event.ActionListener |
reset
Reset all the defaults |
private javax.swing.JButton |
resetButton
Buttons to operate this dialog |
(package private) javax.swing.event.DocumentListener |
validateDL
|
(package private) java.awt.event.ItemListener |
validateOK
|
Fields inherited from class javax.swing.JDialog |
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accessibleContext, rootPane, rootPaneCheckingEnabled |
Fields inherited from class java.awt.Component |
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BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface javax.swing.WindowConstants |
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DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE |
Fields inherited from interface java.awt.image.ImageObserver |
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ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
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ThresholdDialog(Form givenParent)
Create a dialog to allow the user to specify threshold values |
Method Summary | |
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private void |
initalize()
Initalize all the variables and fields. |
private void |
validateButtons()
|
Methods inherited from class javax.swing.JDialog |
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addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update |
Methods inherited from class java.awt.Dialog |
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addNotify, getTitle, hide, isModal, isResizable, isUndecorated, setModal, setResizable, setTitle, setUndecorated, show |
Methods inherited from class java.awt.Window |
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addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, finalize, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, toBack, toFront |
Methods inherited from class java.awt.Container |
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add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
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action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
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clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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private static org.apache.log4j.Logger logger
private static java.lang.Double MAF_DEFAULT
private static java.lang.Double MAXMAF_DEFAULT
private static java.lang.Double GENO_DEFAULT
private static java.lang.Double MIND_DEFAULT
private Form parent
private javax.swing.JTextField maf
private javax.swing.JTextField maxMaf
private javax.swing.JTextField geno
private javax.swing.JTextField mind
private javax.swing.JTextField hwe
private javax.swing.JTextField mendell
private javax.swing.JTextField mendell2
private javax.swing.JCheckBox mafButton
private javax.swing.JCheckBox maxMafButton
private javax.swing.JCheckBox genoButton
private javax.swing.JCheckBox hweButton
private javax.swing.JCheckBox mendellButton
private javax.swing.JCheckBox mindButton
private javax.swing.JButton okButton
private javax.swing.JButton resetButton
private javax.swing.JButton cancelButton
private java.awt.event.WindowListener properClosing
java.awt.event.ActionListener process
java.awt.event.ItemListener validateOK
javax.swing.event.DocumentListener validateDL
java.awt.event.ActionListener reset
java.awt.event.ActionListener cancel
Constructor Detail |
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public ThresholdDialog(Form givenParent)
givenParent
- form that this dialog is anchored toMethod Detail |
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private void validateButtons()
private void initalize()
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