Package edu.harvard.mgh.purcell.gPLINK2.forms

Class Summary
AlleleAssoc Creates a form that does a basic --assoc test
AlleleFreq Create a form that allows the user to test for Allele frequency.
Basic Create a form that will provide basic summery statistics for a file set.
CCAssoc  
Clustering Form for the clustering command --cluster
FamAssoc  
GenFileSet Reformat a fileset.
HapCCAssoc A form that allows the user to create a Haplotype-based C/C test plink command line
HaploFreq  
HaploPhase  
HapTDTAssoc A haplotype, family based association test form.
HardyWinEq Create a form that checks the hardy weinburg equalibrium of a given data set.
HomozRuns  
IBSdist Create an ibs distance matrix form.
IndHetz  
MendelErr  
Merge Merge two file sets.
Missing Create a Form to test for missing data using PLINK "--missing".
NearNeigh Allow the user to create a nearest neighbour command.
QuantTrtInt A Quantitative trait interaction form.
Regression A linear/logistic regression form.
SetAssoc A Set based association file.
StratAnaly  
Validate Create a form that will provide basic summery statistics for a file set.