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launchOldProject(String)
- Method in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
Open up a project with the appropreate remote configurations.
launchPopup
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
Listen for a tree selection that will activate the popup menu to manipulate the project annotation and open in/out files.
layoutPanels()
- Method in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
Layout the panels; fileView, FolderView, OpView and add the file transfure status note.
layoutPanels(TestFrame.myProject)
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame
layoutPanels()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame
layoutPanels(Project)
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK
Re-set the panels of based on given project.
layoutPanels()
- Method in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK
lengthOpt1
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
lengthOpt2
- Variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
FilterDialog
LinkNewFileDialog
- Class in
edu.harvard.mgh.purcell.gCLINE
A JDailgo that allow the user to link a file to an operation.
LinkNewFileDialog(StartFrame, Record, String)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog
Create a Dialog that will link a file to a given operation.
LinkNewFileDialog.BrowseButton
- Class in
edu.harvard.mgh.purcell.gCLINE
LinkNewFileDialog.BrowseButton(JTextField)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.
LinkNewFileDialog.BrowseButton
list
- Variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
A DefaultList Model that we can modify dynamically if there is something to change
listBrowse
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.ListSelectPanel
listField
- Variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
Merge.ListSelectPanel
loadData(File, String, boolean)
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
Load the info document from xml file, otherwise set as default.
loadGlobalConfig()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
Load the config values from a Properties formated file.
loadRemoteConfig()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Record
loadRemoteConfig()
- Method in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame.myProject
loadRemoteConfig()
- Method in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
LOCAL_DIR
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
Holds the location of the users current directory.
LOCAL_FOLDER_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
local project file
LOCAL_UPDATE_INTERVAL_KEY
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
local update interval key
localChooser
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
Configure
localChooser
- Variable in class edu.harvard.mgh.purcell.gCLINE.
RestoreDataDialog
localChooser
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Our file choosing class for the local directory.
localChooser
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Our file choosing class for the local directory.
localConfig
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Record
localConfig is a Properties that holds the local project configuration data.
localDisc
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
FileInfo
A string that holds an operation specific discription of this file.
localFilenames
- Variable in class edu.harvard.mgh.purcell.gCLINE.
PopUpMenu
An array of the full file names of selected local files
localFiles
- Variable in class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
localFolder
- Variable in class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
localPicker
- Variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
A dialog that allows hte user to select a local file.
localProject
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
Let the user look at the local project directory.
localProject
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
Let the user look at the local project directory.
Lock
- Class in
edu.harvard.mgh.purcell.gCLINE.data
Deal with the locking and unlocking of a folder.
Lock(StartFrame, Record)
- Constructor for class edu.harvard.mgh.purcell.gCLINE.data.
Lock
Create a lock from a string representing the local file and set the new key.
LOCK_FILE
- Static variable in interface edu.harvard.mgh.purcell.gCLINE.data.
KeyWords
file that holds the project lock
lockFile
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
The lock file.
lockFile()
- Method in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
Write the key to the lock file.
logger
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
AutoUpdater
A logger for this clas
logger
- Variable in class edu.harvard.mgh.purcell.gCLINE.data.
Lock
A logger for this clas
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.data.
Record
logger is a Logger that optionally log messages for debugging/troubleshooting.
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.data.
RunCommand
Define a static logger variable
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.general.
GCFileChooser
Log comments and errors
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.
HierarchyDialog
Define a static logger variable so that it references the
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FileView
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.
FolderView
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.pane.
OpView
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.
PopUpMenu
Define a static logger variable so that it references the
logger
- Variable in class edu.harvard.mgh.purcell.gCLINE.
RestoreDataDialog
A logger for this class
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.
StartFrame
Optionally log messages.
logger
- Variable in class edu.harvard.mgh.purcell.gCLINE.tester.
Open
A logger for this clas
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.tester.
TestFrame
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gCLINE.
TransfureFiles
Define a static logger variable so that it references the
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
Form
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
InputPane
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
OutputPane
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.baseForm.
ThresholdDialog
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.data.
Project
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.forms.
HomozRuns
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.
GPLINK
Optionally log messages.
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.
OpenHapDialog
Log comments and errors
logger
- Static variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Execute
Optionally log messages.
logger
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Import
A logger for this class
logger
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PLINK_Open
A logger for this class
logger
- Variable in class edu.harvard.mgh.purcell.gPLINK2.
PlinkMenuBar
A logger for this class
Overview
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