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Browsing the results
Clicking on the finished operation, you will see a tree that lists:
- The fileroot and description
- The actual PLINK command run
- The associated input files
- The associated output files
The bottom panel shows the LOG file from this PLINK job.
As mentioned, all this analysis has done is to count the
number of individuals and SNPs, and apply the default
filters (based on allele frequency and genotyping rate).
In the LOG file, you can also see that 1 individual has been
excluded based on the genotyping rate filter, and that
this individual has been recorded in the file valid1.irem.
You can also see this file in the top tree list of output files.
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