Haploview
After creating the Haploview file in gPLINK from the full WGAS fileset, we can right-click to download and Open in Haploview. Here we use Haploview to look at the LD structure for this region.End of the tour!
This concludes our short tour. Hopefully this has given you a flavour for how these tools work together. There are, of course, many more options available in all 3 of these tools. Please consult the documentation for gPLINK, PLINK and Haploview to learn more about these tools.Previous | End