PLINK: Whole genome data analysis toolset
Here is the analysis you requested...
Here is the command you should run...
plink " .$cmdline . "
Commands in PLINK should be entered as a single line. If the command wraps onto multiple lines, you may need to remove the extra spaces before running it.
Here is the output you should expect...
Removed individuals (low genotyping)
Heterozygous haploid genotype calls
Thanks for using PLINK and PLINK-O-MATIC!
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