PLINK: Whole genome data analysis toolset plink...
Last original PLINK release is v1.07 (10-Oct-2009); PLINK 1.9 is now available for beta-testing

Whole genome association analysis toolset

Introduction | Basics | Download | Reference | Formats | Data management | Summary stats | Filters | Stratification | IBS/IBD | Association | Family-based | Permutation | LD calcualtions | Haplotypes | Conditional tests | Proxy association | Imputation | Dosage data | Meta-analysis | Result annotation | Clumping | Gene Report | Epistasis | Rare CNVs | Common CNPs | R-plugins | SNP annotation | Simulation | Profiles | ID helper | Resources | Flow chart | Misc. | FAQ | gPLINK

1. Introduction

2. Basic information

3. Download and general notes

4. Command reference table

5. Basic usage/data formats 6. Data management

7. Summary stats 8. Inclusion thresholds 9. Population stratification 10. IBS/IBD estimation 11. Association 12. Family-based association 13. Permutation procedures 14. LD calculations 15. Multimarker tests 16. Conditional haplotype tests 17. Proxy association 18. Imputation (beta) 19. Dosage data 20. Meta-analysis 21. Annotation 22. LD-based results clumping 23. Gene-based report 24. Epistasis 25. Rare CNVs 26. Common CNPs 27. R-plugins 28. Annotation web-lookup 29. Simulation tools 30. Profile scoring 31. ID helper 32. Resources 33. Flow-chart 34. Miscellaneous 35. FAQ & Hints

36. gPLINK 		 

This page contains old versions of PLINK.

Archive

The latest release version is 1.07 (see main download page).

Version 1.06.
Linux (x86_64) plink-1.06-x86_64.zip v1.06
Linux (i686) plink-1.06-i686.zip v1.06
MS-DOS plink-1.06-dos.zip v1.06
Apple Mac (PPC) plink-1.06-mac.zip v1.06
C/C++ source (.zip) plink-1.06-src.zip v1.06

Version 1.05.
Linux (x86_64) plink-1.05-x86_64.zip v1.05
Linux (i686) plink-1.05-i686.zip v1.05
MS-DOS plink-1.05-dos.zip v1.05
Apple Mac (PPC) plink-1.05-mac.zip v1.05
C/C++ source (.zip) plink-1.05-src.zip v1.05

Version 1.04.
Linux (x86_64) plink-1.04-x86_64.zip v1.04
Linux (i686) plink-1.04-i686.zip v1.04
MS-DOS plink-1.04-dos.zip v1.04
Apple Mac (PPC) plink-1.04-mac.zip v1.04
C/C++ source (.zip) plink-1.04-src.zip v1.04

Version 1.03.
Linux (x86_64) plink-1.03-x86_64.zip v1.03
Linux (i686) plink-1.03-i686.zip v1.03
MS-DOS plink-1.03-dos.zip v1.03
Apple Mac (PPC) plink-1.03-mac.zip v1.03
C/C++ source (.zip) plink-1.03-src.zip v1.03

Version 1.02.
Linux (x86_64) plink-1.02-x86_64.zip v1.02
Linux (i686) plink-1.02-i686.zip v1.02
MS-DOS plink-1.02-dos.zip v1.02
Apple Mac (PPC) plink-1.02-mac.zip v1.02
C/C++ source (.zip) plink-1.02-src.zip v1.02

Version 1.01.
Linux (x86_64) plink-1.01-x86_64.zip v1.01
Linux (i686) plink-1.01-i686.zip v1.01
MS-DOS plink-1.01-dos.zip v1.01
Apple Mac (PPC) plink-1.01-mac.zip v1.01
C/C++ source (.zip) plink-1.01-src.zip v1.01

Version 1.00.
Linux (x86_64) plink-1.00-x86_64.zip v1.00
Linux (i686) plink-1.00-i686.zip v1.00
MS-DOS plink-1.00-dos.zip v1.00
Apple Mac (PPC) plink-1.00-mac.zip v1.00
C/C++ source (.zip) plink-1.00-src.zip v1.00

Version 0.99r.
Linux (x86_64) plink-0.99s-x86_64.zip v0.99s
Linux (i686) plink-0.99s-i686.zip v0.99s
MS-DOS plink-0.99s-dos.zip v0.99s
Apple Mac (PPC) plink-0.99s-mac.zip v0.99s
C/C++ source (.zip) plink-0.99s-src.zip v0.99s

Version 0.99r.
Linux (x86_64) plink-0.99r-x86_64.zip v0.99r
Linux (i686) plink-0.99r-i686.zip v0.99r
MS-DOS plink-0.99r-dos.zip v0.99r
Apple Mac (PPC) plink-0.99r-mac.zip v0.99r
C/C++ source (.zip) plink-0.99r-src.zip v0.99r

Version 0.99q.
Linux (x86_64) plink-0.99q-x86_64.zip v0.99q
Linux (i686) plink-0.99q-i686.zip v0.99q
MS-DOS plink-0.99q-dos.zip v0.99q
Apple Mac (PPC) plink-0.99q-mac.zip v0.99q
Solaris plink-0.99q-solaris.zip v0.99q
C/C++ source (.zip) plink-0.99q-src.zip v0.99q

Version 0.99p.
Linux (x86_64) plink-0.99p-x86_64.zip v0.99p
Linux (i686) plink-0.99p-i686.zip v0.99p
MS-DOS plink-0.99p-dos.zip v0.99p
Apple Mac plink-0.99p-mac.zip v0.99p
Solaris plink-0.99p-solaris.zip v0.99p
C/C++ source code plink-0.99p-src.zip v0.99p

Version 0.99o.
Linux (x86_64) plink-0.99o-linux-x86_64.zip v0.99o
Linux (i686) plink-0.99o-linux-i686.zip v0.99o
MS-DOS plink-0.99o-dos.zip v0.99o
Apple Mac plink-0.99o-mac.zip v0.99o
Solaris plink-0.99o-solaris.zip v0.99o
C/C++ source code plink-0.99o-src.zip v0.99o

Version 0.99n.
Linux (x86_64) plink-0.99n-linux-x86_64.zip v0.99n
Linux (i686) plink-0.99n-linux-i686.zip v0.99n
MS-DOS plink-0.99n-dos.zip v0.99n
Apple Mac plink-0.99n-mac.zip v0.99n
Solaris plink-0.99n-solaris.zip v0.99n
C/C++ source code plink-0.99n-src.zip v0.99n

Version 0.99m.

Linux (x86_64) plink-0.99m-linux-x86_64.tar.gz v0.99m
Linux (i686) plink-0.99m-linux-i686.tar.gz v0.99m
MS-DOS plink-0.99m-msdos.zip v0.99m
Apple Mac plink-0.99m-mac.zip v0.99m
Solaris plink-0.99m-solaris.tar.gz v0.99m
C/C++ source code plink-0.99m-src.tar.gz v0.99m
C/C++ source code plink-0.99m-src.zip v0.99m

Version 0.99l.

Linux (x86_64) plink-0.99l-linux-x86_64.tar.gz v0.99l
Linux (i686) plink-0.99l-linux-i686.tar.gz v0.99l
MS-DOS plink-0.99l-msdos.zip v0.99l
Apple Mac plink-0.99l-mac.zip v0.99l
Solaris plink-0.99l-solaris.tar.gz v0.99l
C/C++ source code plink-0.99l-src.tar.gz v0.99l
C/C++ source code plink-0.99l-src.zip v0.99l

 
This document last modified Wednesday, 25-Jan-2017 11:39:26 EST