PLINK/SEQ

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Getting started

• PLINK/SEQ 101
• Extended tutorial

Key concepts

• Project structure
• Variants and samples
• Meta-information
• Masks

PSEQ documentation

• Basic syntax
• Project management
• Main data input
• Auxiliary data input
• Viewing data
• Eval expressions
• Data output
• Summary statistics
• Association tests
• Locus DBs
• Other reference DBs
• Misc. commands

Other tools and resources

• Resource DBs
• Rplinkseq
• Web browser interface
• Utilities

Tutorials

• PLINK/Seq and GWAS
• Imputed/dosage data

Technical reference

• C/C++ library API