Development of PLINK is ongoing: as such, there is always
likely to be a list of features that are only partialy implemented, or
have problems of some kind. Our policy is to release a web-based
warning for these as soon as any problems are identified, and, for
more major problems, to release a patched version on the main download
page as soon as possible.
Note that any new patched verions will still give the web-based
warning message (i.e. that is based solely on version number, rather
Want to ignore a warning and run the analysis anyway? Then run
PLINK with the --noweb flag to disable the web-check. Not
Often, the issues flagged here are fixed in the development source
code, available from , which
you will need to compile yourself.